Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0246 ATGATGGATTCTCTGAAGAAGTCGATTAAGTCTCATGGTTCTTATAAGAATACGAAAATCTCGGCTGGTGGACCTGACGATTCGATTGGTGAACAACAGCCGATTTTGATGCATCACAATGGTGACAGAACGAGGTCAGGAGATTCTGGCGAGGTTGATCGGAAAGAGTTTATAGTGAAGATCGACGGCGAGGATGAGGGTGGCAGAGGCCGCAGCAGCAGCGGCGGTGGTGGTGTCAGCGGCAGCAGTGGTAGCCGTGGTAGCAGTGGTAGCCGTGGTAGCGGTGCAAGCAAGATATGGAGAGAACCGAGCTATGAATTTTGGAGAGATGGAGGCGAGATTGAACGAAAAAGTGGTGGGAGTTTTCAGTTCCAGCAGCCGTTGGCGACGGAGGATCCACCGTCTAAGCTGATTGGCCAGTTCTTACACAAACAGAAAGCGTCGGGTGATTTTTCTCTTGATATGGATATGGAAATGGAAGAGCTGAGAGATGAGAAGAGCGAGCCTCCGATGCCAGAGAGTAACATGCACCCAATGATGTCATCCAGAGAGATGAAGGTATCGTTTCAACCTCAGACCACCGGAGCAGATGAAATGAGATCTGAAACCGTTAGAAGATCCTACATCGATAAGGAAGGTTCCGATAAGGATGGTTCTGATGAAGATGACATTAAACGAGACAATTGCGACAATCCGGATGGTGAAGTTTTGATGTGTACTTCAAACATGGAGTTTCAAAGGAAGTCGACTTTGTTAAGAAACAAGACCAAGTCAAGGTTGGCAGATCGTACCGAATATGTAATGAAGTCCGGGTTAGTGCCCAAATCAGGTCTGTTGCCAAAGTCTGGGATGTTGAAATCAGGATTGTTGGGGAAATCTGAGGAAGACGAAGAAGATCCGTTCTTCGTGGACGACCTACCCGAGGAGTTCAAGCGGTCAAATTTTAGTTTTTGGACTATTCTTCAATGGTTAATTCTCATTTTGTTGGTGGCAGTATTAGTTTGTAGTCTCACGATACCTCTATTCAAGGATAGGATTCTTTGGAAACTCAGGTTGTGGAGATGGGAAGTGATGGTTTTGGTATTGATATGTGGTAGATTAGTTTCTGGCTGGGGGATACGGCTCGTGGTTTTCTTTATTGAAAGAAATTTTCTTCTTCGGAAACGGGTATTGTATTTTGTGTATGGATTGAGGAAGGCAGTTCAGAATTGTCTGTGGTTGGGTCTTGTTCTGATTGCTTGGCATATTATGTTTGATAAGAAGGTTGAGAGGGAGACAAAGAACGATTCTCTTAAGTATGTAACTAAGATTTTGGTATGCCTCTTGGTGGGTGTCTTGTTATGGCTACTAAAGACCCTCATGGTTAAGGTCCTTGCATCTTCCTTCCATGTGAGCACATTCTTTGATCGAATTCAGGAGGCTTTATTTAATCAATATGTGATTGAGACTCTATCGGGTCGACCCTCGCTTGAGATACAGCACCATAAGGATGAGGAGCAGAGTGTTTTGGCTGAAGTTACGAAGCTTCAGAATGCAGGAATTACAGTGCCCCCTGAACTCAGGGCAGCTGCCCTCCGGCCATCGAGTGGGAGGGTGATAGGGAGCGGAGGTCTCCAGAAAGGCTCTGTAGGAAAAAGTCTAAGACTGTCAAGGACAATTTCAAAAAAGCAAGATGAGGGGATAACAATTGATGACTTGCACAAGCTTAATCATGAGAATGTTTCTGCCTGGAACATGAAGAGGTTAATGCATATGGTGCGGCATGGGTCCCTTGCTACACTGGATGAGCAAATTCATGATTCAACTCACAAGGACGAGTCTGCAACGCAGATTAAGAGTGAACATGAGGCAAAAATTGCGGCAAGGAAAATATTTCACAATGTAGCCAAGCCAAATTGCAAATACATTGACCTGGAGGATATAATGCGCTTCATGCGAGAAGATGAAGCTTTGAAAACCATGAGTCTGTTTGAAGGAGCATCCCAAAGTGGGAAAATCAGCAAGTCAGCCTTGAAGAACTGGGTGGTTAATGCTTTCAGAGAAAGGCGAGCACTTGCTTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTGTAGTTGTCATAATCGTATTGATCACCTCGCTTCTTATACTAGGAATTGCAACAAAGCAATTCATGACCTACTTAAGCTCTCAGCTCCTCCTAGTCGCATTTATATTTGGAAACACCTGCAAAAATATATTTGAAGCCATAATCTTCTTATTTGTGATGCATCCTTTTGATGTGGGTGATCGGTGTGAGATTGATGGAGTTCAGATGATAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGGGGCGACAACCAGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGCCCATTGGCAATTACTATCGTAGTCCTGACATGGGAGATTCAGTTGAATTCCTCGTCCATATTGCAACTCCAGCAGAGAAGATTGCCATCATAAGACAGAGAATATTAAGTTACATGGAGAGCAAGAAAGACCACTGGGCTCCTTCACCCATGGTTATTGTAAAGGACTTGGAGGGGTTGAACCAGCTGAGGGTGGCGGTTTGGATGAGCCACACAATAAACCACCAAAATATGGGGGAGAGGTGGACAAGGAGATGCCTTCTGGTCGACGAGATAGTCAAAATTCTGAGGGAGGTCGACATTGAGTATCGCATGATACCGTTGGACATCAACGTCCGCTCCATGCCCATGCCATCCCCTGTGACTTCCAGTCGCCTTCCCCCTTCCTGGACAGCTAGTGGCGGAAACTGA 2823 0.4502 MMDSLKKSIKSHGSYKNTKISAGGPDDSIGEQQPILMHHNGDRTRSGDSGEVDRKEFIVKIDGEDEGGRGRSSSGGGGVSGSSGSRGSSGSRGSGASKIWREPSYEFWRDGGEIERKSGGSFQFQQPLATEDPPSKLIGQFLHKQKASGDFSLDMDMEMEELRDEKSEPPMPESNMHPMMSSREMKVSFQPQTTGADEMRSETVRRSYIDKEGSDKDGSDEDDIKRDNCDNPDGEVLMCTSNMEFQRKSTLLRNKTKSRLADRTEYVMKSGLVPKSGLLPKSGMLKSGLLGKSEEDEEDPFFVDDLPEEFKRSNFSFWTILQWLILILLVAVLVCSLTIPLFKDRILWKLRLWRWEVMVLVLICGRLVSGWGIRLVVFFIERNFLLRKRVLYFVYGLRKAVQNCLWLGLVLIAWHIMFDKKVERETKNDSLKYVTKILVCLLVGVLLWLLKTLMVKVLASSFHVSTFFDRIQEALFNQYVIETLSGRPSLEIQHHKDEEQSVLAEVTKLQNAGITVPPELRAAALRPSSGRVIGSGGLQKGSVGKSLRLSRTISKKQDEGITIDDLHKLNHENVSAWNMKRLMHMVRHGSLATLDEQIHDSTHKDESATQIKSEHEAKIAARKIFHNVAKPNCKYIDLEDIMRFMREDEALKTMSLFEGASQSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNVVVVIIVLITSLLILGIATKQFMTYLSSQLLLVAFIFGNTCKNIFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRGDNQKIVFPNSTLATRPIGNYYRSPDMGDSVEFLVHIATPAEKIAIIRQRILSYMESKKDHWAPSPMVIVKDLEGLNQLRVAVWMSHTINHQNMGERWTRRCLLVDEIVKILREVDIEYRMIPLDINVRSMPMPSPVTSSRLPPSWTASGGN* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0246 940 MobiDBLite consensus disorder prediction 199 232 - -
Vvi3g0246 940 Gene3D - 760 809 IPR023408 -
Vvi3g0246 940 MobiDBLite consensus disorder prediction 184 232 - -
Vvi3g0246 940 MobiDBLite consensus disorder prediction 75 95 - -
Vvi3g0246 940 PIRSF Memb_At2g17000 41 940 IPR016688 -
Vvi3g0246 940 MobiDBLite consensus disorder prediction 1 135 - -
Vvi3g0246 940 FunFam Predicted mechanosensitive ion channel 760 809 - -
Vvi3g0246 940 SUPERFAMILY Sm-like ribonucleoproteins 749 809 IPR010920 -
Vvi3g0246 940 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 154 934 IPR016688 -
Vvi3g0246 940 MobiDBLite consensus disorder prediction 41 69 - -
Vvi3g0246 940 Pfam Mechanosensitive ion channel 701 906 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0246 Vvi-Chr3 2110199 2116339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0246 52 940 Mechanosensitive Ion Channel Family AT1G78610 55.113 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0246 K22048 - vvi:100262278 1722.6