Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0228 ATGGACTCTGGATCACACCAAGCAAAATCCGATCTCAATGGAGCTTCAAACCAGCAAGGTGCTTTGAGGATAGGTGGTTCCAAGTTTGTTCCACAGATGAAACGCAGCAACCGAAGAGCTCTAGGCAACATCGATCAGAACATCTTGGGAGCTACCCTTCAGCCTTGCGTGATCACAAAAAGAGAATCCTCAGGGAAAGATGCCATCTGCATGAAGAACCCAGAAAATTTAGCATATATACAAACAACAAGGAACTTTGCAGGAGAAATGGAAATTGAGAAACCAACAACTTTGGCCTCAAATTTGAGTGGCCATGAGGATTGCAAGATTGAAGATGTTGGAGAGTTTAGGGATGTTATTGATGCTTCCACCCCAATGTTTGTGAAGCATACAGAAGCAATACTAGATGAAATCGATGAAATTGTTTGCGAGGAGATTGAAATGGAAGATGCAATGGAAGATGACCTTGTCTTGGATATCGACGGTTCTGATATAGAAAACCCGCTTGCTGTTGTTGAGTACATAGATGATATATATCATTTCTACAGGAAAACTGAGAGTCTCAGCTGTGTATCACCGACCTACATGTCCTTTCAATTCGATATCAACCAGAAAATGAGGGCTATCCTCATTGATTGGCTTATTGAGGTCCACTACAAATTTGAGCTCATGGACGAGACGTTATTCCTCACAGTCAACCTTATAGACAGGTTCCTAGAGCGGCAAACAGTGAGCAGAAAGAAGCTTCAACTGGTAGGCATGACAGCCATGCTTTTGGCATGTAAATATGAGGAGGTTTGTGTTCCCATTGTGGAGGATCTAATTGTGATATGCGATAAGGCTTATACAAGGACGGAAGTTTTGGATATGGAGAAAGTCATGGTGAATACTTTACAATTCAATATGTCTGTTCCAACACCATACGTATTCATGAGGAGATTCCTCAAGGCAGCTCAGTCGGACAGAAAGGTTAGTATTAGCCTAATAGGATTCCCACAAGGCAGCTTAATCTCAAACAAGTTTTAA 1026 0.4181 MDSGSHQAKSDLNGASNQQGALRIGGSKFVPQMKRSNRRALGNIDQNILGATLQPCVITKRESSGKDAICMKNPENLAYIQTTRNFAGEMEIEKPTTLASNLSGHEDCKIEDVGEFRDVIDASTPMFVKHTEAILDEIDEIVCEEIEMEDAMEDDLVLDIDGSDIENPLAVVEYIDDIYHFYRKTESLSCVSPTYMSFQFDINQKMRAILIDWLIEVHYKFELMDETLFLTVNLIDRFLERQTVSRKKLQLVGMTAMLLACKYEEVCVPIVEDLIVICDKAYTRTEVLDMEKVMVNTLQFNMSVPTPYVFMRRFLKAAQSDRKVSISLIGFPQGSLISNKF* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0228 341 SMART cyclin_7 212 296 IPR013763 -
Vvi3g0228 341 FunFam G2/mitotic-specific cyclin 191 303 - -
Vvi3g0228 341 PANTHER CYCLINS 132 315 IPR039361 -
Vvi3g0228 341 Gene3D - 191 303 - -
Vvi3g0228 341 ProSitePatterns Cyclins signature. 207 238 IPR006671 -
Vvi3g0228 341 SUPERFAMILY Cyclin-like 166 302 IPR036915 -
Vvi3g0228 341 CDD CYCLIN_AtCycB-like_rpt1 157 300 - -
Vvi3g0228 341 Gene3D - 177 324 - -
Vvi3g0228 341 MobiDBLite consensus disorder prediction 1 29 - -
Vvi3g0228 341 Pfam Cyclin, N-terminal domain 177 303 IPR006671 -
Vvi3g0228 341 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0228 Vvi-Chr3 1951605 1954457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0228 3 329 Core Cell Cycle Gene Families AT1G76310 55.848 9.58e-118 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0228 K21777 - vvi:100262390 624.009