Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0214 ATGTTATCAGGGTTGATGAACTTTTTGAGGGCCTGTTTTCGGCCAGGGTCGGATCGATATGTTCACACGGGTTCGGACGCTGGTGGTCGCCAGGATGGGCTCCTGTGGTACAAAGATTCTGGGCAGCACTCTAGTGGTGAATTCTCGATGGCTGTTATTCAGGCCAACAATTTACTTGAAGATCATAGCCAGATTGAGTCAGGCAGTTTGAGCTCACATGAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTTTCAAGCAACAGAAGAGGGGTTTATCTCTCTTGTTGCTAGACAGTGGTCCATCAGACCACAGCTTGCAGCAGTCGGATCATGCTGCCTGGTTGGTGTTATTTGTGGTGGGAATCTTCACATCGCCAACCTTGGCGATTCCCGTGCGGTTTTGGGGAGACTTGTGAAGGCAACTGGGGATGTTCTAGCCATTCAGCTGTCAGCTGAGCACAATGCTTGTATAGAGTCTGTTAGACAGGAGCTGCATTCTCTGCACCCGGACGACAATCAAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGGGAGCCTTTAATTGCCAAGTTTCGCCTTCGTGAACCATTCAGAATGCCAATATTGAGCTCAGACCCAGCAATTTCAGTGCACCCACTCCAGCCACACGATCAGTTTGTTATATTTGCATCTGATGGGCTCTGGGAGCACCTTAGCAATCAGGAGGCAGTAGATATTGTTCAAAGTCACCCTCGCAATGGAAGTGCAAAGAGGCTGGTGAAAGCTGCTTTACAAGAAGCAGCAAAAAAGAGAGAAATGAGGTATTCAGACCTGAAGAAGATTGACCGAGGGGTTCGTCGGCATTTCCATGATGACATCACAGTGATTGTTGTGTTTCTTGACTCAAATCTCGTGAGCAGGGCTAGCTCAGTCAAATGCTCTAATATCTCTGTGAGAGGAGGTGGGATCAACCTGCCTGCCAATACTCTTGCCCCTTTCGCTACCCCCACTGAAGCTGGCTCTACCTGA 1194 0.4765 MLSGLMNFLRACFRPGSDRYVHTGSDAGGRQDGLLWYKDSGQHSSGEFSMAVIQANNLLEDHSQIESGSLSSHESGPYGTFVGIYDGHGGPETARYINDHLFHHLKRFTSEQQSMSTDVIRKAFQATEEGFISLVARQWSIRPQLAAVGSCCLVGVICGGNLHIANLGDSRAVLGRLVKATGDVLAIQLSAEHNACIESVRQELHSLHPDDNQIVVLKHNVWRVRGLIQITRSIGDVYLKKAEFNREPLIAKFRLREPFRMPILSSDPAISVHPLQPHDQFVIFASDGLWEHLSNQEAVDIVQSHPRNGSAKRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSVKCSNISVRGGGINLPANTLAPFATPTEAGST* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0214 397 CDD PP2Cc 48 355 IPR001932 -
Vvi3g0214 397 ProSiteProfiles PPM-type phosphatase domain profile. 44 355 IPR001932 -
Vvi3g0214 397 Gene3D - 36 366 IPR036457 -
Vvi3g0214 397 SMART PP2C_4 39 353 IPR001932 -
Vvi3g0214 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Vvi3g0214 397 Pfam Protein phosphatase 2C 74 325 IPR001932 -
Vvi3g0214 397 PANTHER PROTEIN PHOSPHATASE 44 353 IPR015655 GO:0004722|GO:0006470
Vvi3g0214 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Vvi3g0214 397 FunFam Phosphatase 2C family protein 36 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0214 Vvi-Chr3 1872399 1877032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0214 1 396 PP2C-type Phosphatase Gene Family AT4G38520 73.990 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0214 - K01102 vvi:100248713 797.734