Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0211 ATGGATTTTGATGAGTATGATTATTTGGAGAAAACTGTTGAAAATCCTGAATCACAGAAAGTGAAAGAGACTGTTAATGGGGGTGATGAGACTGTTAAATCAGGGGAAAAGGAGCGTAGTCGCAGTTCAAAGCATAAGAGTGAGGACAATGATGATGATTTGGATCGCCGTTTGAAGCGCTCAAAATCTGGAGATGATTCTCGTGATCATGACAGGCGGAAAGAGAGGGGATCATCTCATCCTCGCTCATCATCCCGAGATGGAGAGAGGGACCGCCACAGGAGTAGCCGTGAACACAGAGAAAGAGACCGAGACAGAGACAGGGATAGGGAGGAGAGGAATGGGAAGGAGAGAGACAGGGAGAAAGACAGAAACAGAGAGCGGGATCGTGATCGGGATAGGAGAGAGCGGGATCGCGAAAGTGAGAGAGAGAGAGAGAGGGAGAGGGAAAGAGAGCGTTCCCGCAGAAGCAGGAGCCGATCAGAAAAGCATCTAAGTGAACGGGATGAGAAAGACAGGGAGAGGAGTCGGGACAGGGAGAATAAAGAAAGAGAAAGAGAGAGGGAGATAAGGGAGCGGGACAGAGAAACCAGATATGCTAGAGCAATCTTCAGATGGTCATTCTGGCAACTGAGCCAGGCTCTGGAACTCAGGCGACATAAAGATAAAAAGGAAGAAGTGGCAGAGCCAGAGGCTGATCCTGAACGGGATCAGAGGACCGTGTTTGCTTATCAGATTTGTTTGAAGGCGGATGAAAGGGATGTCTATGAATTCTTCTCGAGAGCTGGCAAGGTACGAGATGTGAGGCTTATTATGGACCGCAATTCAAGACGTTCCAAGGGAGTTGGATATATTGAATTTTATGATGCAATGTCAGTTCCCATGGCAATAGCACTCTCTGGTCAGCCTCTCCTTGGTCAACCGGTGATGGTCAAGCCATCAGAAGCTGAAAAGAATCTGGTTCAGTCAACTACAGCTGCAGCTGGTGGACCTGGAGGGCTTATAGGGCCCTATTCAGGGGGGGCTAGAAGGCTGTATGTCGGGAATTTGCATTTCAACATTACAGAAGATCAACTTCGGCAGGTATTTGAACCGTTTGGTACTGTAGAACTTGTGCAACTGCCTACTGATCTGGAGACTGGACATTGCAAAGGTTTTGGTTTTGTGCAGTTTGCACGTCTAGAAGATGCTAGAGCTGCACAAAGTTTAAATGGACAATTGGACATTGCTGGGCGGACAATCAAGGTTTCAGTGGTTACTGATCAAGCAGGATTGCAAGATATTGGTGCAAATGCAGGTGATTTTGACGATGATGAAGGTGGTGGTTTGTCCCTGAATGCTCGTTCTAGAGCAATTCTCATGCAGAAGTTGGATCGCAGTGGCACCACTCCAGGCATTGCTGGTTCACTTGGCTCCCCTGTGCTTAATAACCCTGGCCTTCCTCTATCAACAGCCCCTATTCTTGGTGCTGCACCTGTAGTGTCGCCTCTTGTTGCTCCTCTTGTACAGGCCCCGGTTCCTGGACTTGCAGGATTGCCAGGTGCTGGTCTTCAAGTTCCAGCTGTTACTGTTCCTTCCATTGACACTATTGGTGTCCCCAGCGAATGTTTGATGTTAAAGAATATGTTTGATCCCAAATTAGAGACGGAGCCAGATTTTGATCTGGACATTAAAGAAGATGTTCAAGATGAATGCTCTAAGTTTGGAACAGTGAAGCATATCTATGTAGACAAGAATAGTGCTGGTTTTGTATTCTTGCGATTTGAAAACACACAAGCTGCAATAAGTGCACAACGTGCCCTACATGGTAGATGGTTTGCTGGGAAGATGATCACTGCAACATTCATGCTGCCCCAGAACTACGAGGCTAAATTCCCGGATAGCAGATAG 1890 0.4725 MDFDEYDYLEKTVENPESQKVKETVNGGDETVKSGEKERSRSSKHKSEDNDDDLDRRLKRSKSGDDSRDHDRRKERGSSHPRSSSRDGERDRHRSSREHRERDRDRDRDREERNGKERDREKDRNRERDRDRDRRERDRESERERERERERERSRRSRSRSEKHLSERDEKDRERSRDRENKEREREREIRERDRETRYARAIFRWSFWQLSQALELRRHKDKKEEVAEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGGPGGLIGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQLPTDLETGHCKGFGFVQFARLEDARAAQSLNGQLDIAGRTIKVSVVTDQAGLQDIGANAGDFDDDEGGGLSLNARSRAILMQKLDRSGTTPGIAGSLGSPVLNNPGLPLSTAPILGAAPVVSPLVAPLVQAPVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKNMFDPKLETEPDFDLDIKEDVQDECSKFGTVKHIYVDKNSAGFVFLRFENTQAAISAQRALHGRWFAGKMITATFMLPQNYEAKFPDSR* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0211 629 NCBIfam splicing factor, CC1-like family 116 627 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vvi3g0211 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 316 IPR000504 GO:0003723
Vvi3g0211 629 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 435 553 IPR029123 -
Vvi3g0211 629 Gene3D - 232 325 IPR012677 -
Vvi3g0211 629 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 628 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vvi3g0211 629 SMART rrm2_1 344 417 IPR003954 GO:0003676
Vvi3g0211 629 SMART rrm2_1 541 614 IPR003954 GO:0003676
Vvi3g0211 629 FunFam Splicing factor, CC1-like protein 530 629 - -
Vvi3g0211 629 SMART rrm1_1 240 312 IPR000504 GO:0003723
Vvi3g0211 629 SMART rrm1_1 536 614 IPR000504 GO:0003723
Vvi3g0211 629 SMART rrm1_1 344 417 IPR000504 GO:0003723
Vvi3g0211 629 FunFam CC1-like, splicing factor 338 447 - -
Vvi3g0211 629 CDD RRM3_RBM39_like 534 616 - -
Vvi3g0211 629 MobiDBLite consensus disorder prediction 1 181 - -
Vvi3g0211 629 CDD RRM2_RBM23_RBM39 345 422 - -
Vvi3g0211 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 308 IPR000504 GO:0003723
Vvi3g0211 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 559 611 IPR000504 GO:0003723
Vvi3g0211 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 415 IPR000504 GO:0003723
Vvi3g0211 629 CDD RRM1_RBM39_like 240 312 - -
Vvi3g0211 629 Gene3D - 339 429 IPR012677 -
Vvi3g0211 629 FunFam RNA-binding protein 39 isoform X1 232 324 - -
Vvi3g0211 629 SUPERFAMILY RNA-binding domain, RBD 343 621 IPR035979 GO:0003676
Vvi3g0211 629 SUPERFAMILY RNA-binding domain, RBD 233 340 IPR035979 GO:0003676
Vvi3g0211 629 Gene3D - 530 629 IPR012677 -
Vvi3g0211 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 540 618 IPR000504 GO:0003723
Vvi3g0211 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 421 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0211 Vvi-Chr3 1825292 1843230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0211 345 418 Eukaryotic Initiation Factors Gene Family AT4G34110 40.000 1.81e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0211 K13091 - vvi:100253813 911.368