Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0203 ATGTTTCAGAATCAGGTTAACAGAACTTATTTTGATAACAGAGAACATTCTAGCCCAGTTACAAGTAGGTTTTTTGAAGTGGGTATGATGTTAATTGCAGGAGAAACGATCAATATGGTGCAGAGCCTCATGGAGAGGCTAAGGCCTCTTGTGGGATTGAAAAGCAGGGACTGGGACTACTGTGTTCTTTGGAAACTAAGTGAAGATCAAAGGTTTCTGGACTGGATGGACTGTTGCTGCGCCGGAGGAGGTGAAAACAGTACTCAAAATGGTGGAGAAGAGCATCTTTTTCCTGTTTCCAGTGTCCTTCCTTGCAGGGATGCCATGTCGCAGCACCCAAGAACCAAATCTTGTGATCTTCTTGCCCAACTGCCTTCTTCCATCTCCCTAGATTCTGGGATTCATGGACAGACCTTGATCTCAAACCAACCCAGATGGCTCAACTTCTGTAATAGCTCAGATTCAAGCATTCTTGAAGAAACAGTTGGGACTGGGCTCCTGATTCCAGTTCTGGGAGGACTAATTGAGCTGTTTGTTGCTAAACAAGTAGCTGAGGATCAACATGTAATCAACTTTGTTACAACACAGTGCCACATGATCTCAATGGAGCAGGAAGCCATGATGAATTCAAGCAATATCAATTCAATCTTCTCGGTTAATGTCAATGGAGGCAATGCAGATGAGAATCAAAAGGATCCCAACAATCATTTCCAGGCACCAATTTCCCCAGTAACAGCAATGGAGGACTTGAATGATCTGCCAATCTCAGTCGACCAAATCCGCCTATGCAGCTCTCCCATGAACTTCTTGCAGCAATTCAGTTACACCTCTGAGAGTAGTATCAAGAATGATGTCTTCTTTGAAGGATCCCATGACTCATTTCTTTCAGAGAAGACAATGATGAATGCTTTAGATTGTGGATTTCAGGAGATGGAGGCAATGCAGAAGTCCATGCATATAGAAATGATGGAGCCTCTAGCAAACAAGGAGCAGCTGGGTGATGATCATAAGGATTTGAGTGCTAAAAGAACAGCGAACCAAGCTGATTCAGTTTCAGACTGCAGTGATCAGATTGATGATGATGATGATTTAAAGTTCCAAAGGAGGACAGGGAAAGGGGCTCAATCGAAAAACATCGATGCTGAGAGGAGGCGAAGGAAGAAGCTTAATGATAGGCTCTATGCGCTTCGTTCTTTGGTTCCCAAAATATCAAAGGTAGCTGCCGTTTTGGATAGAGCTTCAATTCTGGGTGATGCAATAGAATTTGTGAAGGAGTTGCAGAAGCAAGCGAAGGATCTGCAAGATGAGCTTGAAGAGAATTCAGAGGACGAAGGTGGGAAGATGAATGCAGGCATCAACAGCAACCCCAACAATCTCCAATCTGAAATTCTGAATGACAATGGATCAGGAGTAAACATCGGGCCTAAAACTGAAAATGAAGAAACTCAAAACCGGTTTCTTATGGGAGCAGCAGGCAATGGCATTGCCGCCAGTGCCTGCAGGCCGCCATCAGCAAAGCAGAACCATGAAACCGACCAAATCACTGATGACAAAGCACAGCAGATGGAGCCCCAAGTGGAGGTGGCTCAGATAGAAGGGAATGACTTCTTTGTCAAGGTGTTTTGCGAGCATAAGGCGGGCGGGTTTGTGAGGCTGATGGAGGCTCTGAGCTCTTTAGGCTTGGAAGTGACTAATGCAAATGTAACAAGCTGCAAAGGCCTGGTTTCCAATCTGTTCAAAGTAGAGAAAAGGGACAGTGAGATGGTCCAAGCTGACCATGTTAGGGACTCCTTGCTCGAGTTAACGAAAAACCCATCTGAAAAATGGCATGGTCAGATGGCTTACGCTTCGGAAAATGGTGGTGGCTTGGACTTCCACAACCATCACCACCACCATCACCTCCACAGCCATCTCCTCAGTTCCCATCACCTCCACCACCTTCAGAATTAG 1950 0.4528 MFQNQVNRTYFDNREHSSPVTSRFFEVGMMLIAGETINMVQSLMERLRPLVGLKSRDWDYCVLWKLSEDQRFLDWMDCCCAGGGENSTQNGGEEHLFPVSSVLPCRDAMSQHPRTKSCDLLAQLPSSISLDSGIHGQTLISNQPRWLNFCNSSDSSILEETVGTGLLIPVLGGLIELFVAKQVAEDQHVINFVTTQCHMISMEQEAMMNSSNINSIFSVNVNGGNADENQKDPNNHFQAPISPVTAMEDLNDLPISVDQIRLCSSPMNFLQQFSYTSESSIKNDVFFEGSHDSFLSEKTMMNALDCGFQEMEAMQKSMHIEMMEPLANKEQLGDDHKDLSAKRTANQADSVSDCSDQIDDDDDLKFQRRTGKGAQSKNIDAERRRRKKLNDRLYALRSLVPKISKVAAVLDRASILGDAIEFVKELQKQAKDLQDELEENSEDEGGKMNAGINSNPNNLQSEILNDNGSGVNIGPKTENEETQNRFLMGAAGNGIAASACRPPSAKQNHETDQITDDKAQQMEPQVEVAQIEGNDFFVKVFCEHKAGGFVRLMEALSSLGLEVTNANVTSCKGLVSNLFKVEKRDSEMVQADHVRDSLLELTKNPSEKWHGQMAYASENGGGLDFHNHHHHHHLHSHLLSSHHLHHLQN* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0203 649 CDD bHLH_AtAMS_like 376 447 - -
Vvi3g0203 649 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 181 602 - -
Vvi3g0203 649 MobiDBLite consensus disorder prediction 333 384 - -
Vvi3g0203 649 Coils Coil 416 443 - -
Vvi3g0203 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 426 IPR011598 GO:0046983
Vvi3g0203 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 439 IPR036638 GO:0046983
Vvi3g0203 649 Pfam Helix-loop-helix DNA-binding domain 378 427 IPR011598 GO:0046983
Vvi3g0203 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 43 194 IPR025610 -
Vvi3g0203 649 Gene3D - 362 443 IPR036638 GO:0046983
Vvi3g0203 649 SMART finulus 379 432 IPR011598 GO:0046983
Vvi3g0203 649 MobiDBLite consensus disorder prediction 434 454 - -
Vvi3g0203 649 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0203 Vvi-Chr3 1771005 1775813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0203 40 617 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.000 6.76e-150 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi3g0203 bHLH-MYC_N 2.8e-21 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0203 - - vvi:100246916 1149.81