Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0201 ATGTCTAAGGAAGTGAGTGAAGAAGGGCAGAGCCATGGGAAGGACTATGTGGATCCACCACCTGCTCCACTGATTGACATAGCTGAGATCAAGCTTTGGTCTTTTTACAGAGCCGTGATAGCTGAGTTCATAGCAACCCTTCTTTTCCTCTACATCACTGTGGCCACGGTCATAGGCTACAAGAAGCAGTCTGATCCATGTGGTGGCGTGGGGCTTCTGGGTATTGCATGGGCTTTTGGTGGGATGATTTTCATTCTCGTCTACTGCACTGCCGGAATCTCTGGTGGGCACATCAACCCTGCTGTGACCTTCGGGTTGTTCTTGGCCAGGAAGGTGTCTCTTATCCGGGCTTTGGCCTACATGGTGGCTCAGTGTTTGGGAGCCATTTGCGGTGTTGGGTTGGTGAAAGCCTTCATGAAATCCTTCTACAATTCACTTGGTGGTGGTGCCAACTCCGTCGCTGCCGGCTACAACAAAGGCACAGCTCTTGGTGCTGAAATCATTGGCACTTTCGTGCTCGTGTACACTGTTTTCTCAGCCACTGACCCCAAGAGAAGCGCCAGAGATTCCCACGTCCCTGTTTTGGCTCCCCTGCCCATTGGGTTTGCTGTCTTCATGGTCCACCTTGCCACCATCCCCATAACCGGCACCGGCATCAACCCCGCCAGGAGCTTCGGCGCCGCCGTCATCTACAACAATGAAAAAGTTTGGGACGACCAGTGGATCTTCTGGGTCGGACCATTTGTGGGAGCACTAGCTGCAGCAGCATACCACCAGTACATACTGAGAGCAGCTGCCATCAAAGCTTTGGGATCATTCCGCAGCAACCCCACCAACTAA 840 0.5286 MSKEVSEEGQSHGKDYVDPPPAPLIDIAEIKLWSFYRAVIAEFIATLLFLYITVATVIGYKKQSDPCGGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALAYMVAQCLGAICGVGLVKAFMKSFYNSLGGGANSVAAGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKVWDDQWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0201 279 CDD MIP 37 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 Gene3D Glycerol uptake facilitator protein. 22 279 IPR023271 -
Vvi3g0201 279 FunFam Probable aquaporin PIP1-2 22 277 - -
Vvi3g0201 279 SUPERFAMILY Aquaporin-like 29 263 IPR023271 -
Vvi3g0201 279 NCBIfam MIP family channel protein 41 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 Pfam Major intrinsic protein 30 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0201 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 268 IPR034294 -
Vvi3g0201 279 ProSitePatterns MIP family signature. 97 105 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0201 Vvi-Chr3 1761077 1762217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0201 1 279 Major Intrinsic Protein MIP AT4G35100 89.286 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0201 K09872 - vvi:100233027 561.992