Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0191 ATGGCCATGGACGACGGAGAACTTGACTTTTCAAACCAAGATGTATTTTCGAGTCCAAATATGGCGGACCTTCCTAGCAGTTGCTCTATGGATAGCTTTTTTGATGAAATTCTGAAGGATACTCATGCTTGCACTCATACTCATACATGTAATCCACCCGGGCCTGATTTTTCACATACACACACTTGTTTTCATGTTCACACCAAAATCGTACCGGCTCCAGCTGAGGACAACATAGCGACGGATGATACAGCAGAGTCTGCAGAGAAGAAATCAAAGAAACGCCCATTGGGCAATAGGGAAGCAGTTCGAAAGTATCGGGAGAAGAAGAAGGCTCGGGCCGCATCCTTGGAGGATGAGGTTGTGAGATTGAGGTCTCTGAATCAGCAGTTGTTGAAGAGGTTGCAGGGGCAGGCTGCATTGGAGGCAGAGGTTGCAAGGCTCAAGTGCTTGCTTGTGGATATCAGGGGAAGGATTGAAGGAGAGATTGGATCATTTCCTTATCAGAAATCAGCCAAGAGTGGGGACGGATATCCAAACATGGTCAATCAAAGCTTGTCTGGGGCTTTTGTGATGAACCCATGTAACCTGCAGTGTGATGATCAGGTTTATTGCCTTCATCCAGGGGTGGAAGCCAAAAATGGGGAAGCTGCAGGTTTAAATGGTCAAGGATTTAACGGTTGTGATTTTGAGAATATACCGTGTGTGGGGAATCCAAGCGCTGCACTAAAGGAGCTTCCTGGTTGTGGAGTTGGGAATGGGATAACCGCCAATTCTTCCATCCCAAATAAGAGAAGGAGAGGATCGGGCAGCAACAGCTAG 822 0.4708 MAMDDGELDFSNQDVFSSPNMADLPSSCSMDSFFDEILKDTHACTHTHTCNPPGPDFSHTHTCFHVHTKIVPAPAEDNIATDDTAESAEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRSLNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKSAKSGDGYPNMVNQSLSGAFVMNPCNLQCDDQVYCLHPGVEAKNGEAAGLNGQGFNGCDFENIPCVGNPSAALKELPGCGVGNGITANSSIPNKRRRGSGSNS* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0191 273 FunFam Basic leucine zipper 24 77 155 - -
Vvi3g0191 273 Coils Coil 100 134 - -
Vvi3g0191 273 MobiDBLite consensus disorder prediction 75 110 - -
Vvi3g0191 273 SUPERFAMILY Leucine zipper domain 91 137 IPR046347 GO:0003700|GO:0006355
Vvi3g0191 273 SMART brlzneu 87 154 IPR004827 GO:0003700|GO:0006355
Vvi3g0191 273 Pfam Basic region leucine zipper 89 144 IPR004827 GO:0003700|GO:0006355
Vvi3g0191 273 CDD bZIP 93 146 - -
Vvi3g0191 273 Gene3D - 79 155 - -
Vvi3g0191 273 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 89 136 IPR004827 GO:0003700|GO:0006355
Vvi3g0191 273 PANTHER CCAAT/ENHANCER BINDING PROTEIN 3 167 IPR031106 GO:0003700|GO:0006351
Vvi3g0191 273 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0191 Vvi-Chr3 1680123 1682840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0191 3 266 bZIP Transcription Factor Family AT2G16770 62.030 4.33e-111 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi3g0191 bZIP_2 8.4e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0191 K25785 - vvi:100243471 553.903