Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0189 ATGAATTTATATTTTTCAGATCTTTCTTTGAGAGATAAGCTCTTGTTGGAGGGCTATTTGGAGGTTCATGAACGCCTCTGCGATATAAAGCAGGTGGATCTCATTGGGCAGGTCTTACCAGGAAGATCAATCAAAAGGGTTCTGGTGAGAGAGGCCAAGAGATGTGCTGCTGCAGCTGTTGTTGTGGGGATAAACTGGAAAAATGCAATTGGGGGTTGGGCTTCAATGGCTAGATATTGCGCAAAGAGGCTGCCCTCTGACACTGAAGTTCTCGCTATTCACAATGGGAAGGTTGTTTTCAGAAGGTGTTCCAATGGCCAAATACCAGGTGATCCCAGACCGAGCTTTTATCTACCTGGGAACTCTAATCCCAGAGAAACACAATCTGAATTTGCTGATTCTGAGGCATCAGATATTGAAAGAGCCAGTTCTGTAGTACTTCAGAGCTATGAAGAAGGATCAGATAAAGGCCTGAAGGACAACAACTTCAGCCTGGGCAATGAACACAAGAAAGTTTCCAGGAGATCGAATTCACTTTTTGTTGGAGACCCTTCAGAGCAAAGGCCTGGTTGGCCCCTACTGCGAAGGACTAATTCGGTGATCCCACAGGCTCCAAATGGAAGAACAATGTCTGTTGTGCAGTGGGTAATGAGCTTACCAGACCGTTCTCCGCCAGAAACTCCTCAATGCCCAGATAAAACAGAAAGTCCTTTGGGTAGCGGGATTGGTCAGTTCACGAATAAGATTAACCAGAATAGATCATCTTCATGGGTAGAGCTGCCTAAAGAACTAGAACTTCTCCTCAAAACAAACTCATCTGATTGCAGGTGGTTCAGTCATGAGGTTTTGAAAGCTTCAACTTCTCAATTCTCCTCAGAAAATCTGATTGGGAAAGGAGGATGTAACCGTGTATACAAGGGTATTCTGCCAAACAGCAAACAAGTGGCAGTAAAGGTTCTGAAGTCATCCAAAGAAGCATGGAAGGATTTTGCCATGGAAGTCAATATCATGTCCTCATTGAAGCACCGACACATTGCCCCTCTGCTTGGGATCTGCCTTGAAGATAGTCATCTAATTTCGGTGTATGAGTTCTTTTCTAGAGGAAGTTTAGAGGAAAACCTACATGGTAGCATCAAACACAAATCAGCATTGTCATGGGAAGTGAGATTCAATTTAGCTGTAGGCGTTGCAGAAGCCCTAAACTACTTACACAATGAGTGTTCTAAACCTGTTATTCATAGAGATATCAAGTCTTCAAACATTCTTCTTTCCAATGATTTTGAACCACAGTTAGCCGACTTTGGCCTCGCTATATGGGGACCCACAACTTCTTCCTTTCTAACACATGGCGATGTAGTTGGAACTTTTGGGTATCTTGCTCCTGAGTATTTCATGTATGGTAAAGTCAGTGATAAAATCGATGTCTACTCTTTTGGTGTGGTTCTCCTTGAATTATTATCAGGAAGAAAGCCAATTGGTTCTGAGAGCCCCAAGGGCCAAGAAAGCTTGGTAATGTGGGCAAAACCAATATTGGAGAGTGGAAATCTAAGAAGTATAATGGATCCAGACCTGGATGGAAAATTTGATGAGGTTCAAATGCAAAGAACGGTTCTTGCAGCTACACTTTGCATCACACAGGCAGCCAGGCGTCGCCCCAAAATAAGCCAGATACTGAAGCTATTGAGAGGGGAGAAAGATGTTGCTAAGTGGGTGAACTCCCAAATTGAAGATCAACATGATTTAGAAAATCAGGATGAAAATGATGATGAAGTTTATCCAGATTCAAGTGCAGAGTCACACCTGGGTCTTGCTTTGCTTGATGTGGATGATAATTTTACATCATTCAGCAGCATGGAGCAAGGCAACCGCCTTTCCTTAGAGGAATATATGAAAGGAAGATGGAGCAGATCATCAAGCTTAGAGTAG 1926 0.4309 MNLYFSDLSLRDKLLLEGYLEVHERLCDIKQVDLIGQVLPGRSIKRVLVREAKRCAAAAVVVGINWKNAIGGWASMARYCAKRLPSDTEVLAIHNGKVVFRRCSNGQIPGDPRPSFYLPGNSNPRETQSEFADSEASDIERASSVVLQSYEEGSDKGLKDNNFSLGNEHKKVSRRSNSLFVGDPSEQRPGWPLLRRTNSVIPQAPNGRTMSVVQWVMSLPDRSPPETPQCPDKTESPLGSGIGQFTNKINQNRSSSWVELPKELELLLKTNSSDCRWFSHEVLKASTSQFSSENLIGKGGCNRVYKGILPNSKQVAVKVLKSSKEAWKDFAMEVNIMSSLKHRHIAPLLGICLEDSHLISVYEFFSRGSLEENLHGSIKHKSALSWEVRFNLAVGVAEALNYLHNECSKPVIHRDIKSSNILLSNDFEPQLADFGLAIWGPTTSSFLTHGDVVGTFGYLAPEYFMYGKVSDKIDVYSFGVVLLELLSGRKPIGSESPKGQESLVMWAKPILESGNLRSIMDPDLDGKFDEVQMQRTVLAATLCITQAARRRPKISQILKLLRGEKDVAKWVNSQIEDQHDLENQDENDDEVYPDSSAESHLGLALLDVDDNFTSFSSMEQGNRLSLEEYMKGRWSRSSSLE* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0189 641 SUPERFAMILY Protein kinase-like (PK-like) 271 561 IPR011009 -
Vvi3g0189 641 ProSiteProfiles Protein kinase domain profile. 290 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0189 641 Gene3D Phosphorylase Kinase; domain 1 253 364 - -
Vvi3g0189 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Vvi3g0189 641 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 259 364 - -
Vvi3g0189 641 PANTHER OS08G0249100 PROTEIN 151 585 IPR046958 -
Vvi3g0189 641 Gene3D Transferase(Phosphotransferase) domain 1 365 580 - -
Vvi3g0189 641 FunFam Putative receptor-like serine/threonine-protein kinase 365 577 - -
Vvi3g0189 641 SMART serkin_6 290 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0189 641 Pfam Protein kinase domain 291 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0189 641 MobiDBLite consensus disorder prediction 111 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0189 Vvi-Chr3 1671220 1673841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0189 278 572 Trihelix Transcription Factor Family AT1G70460 43.333 6.10e-76 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi3g0189 Pkinase 7.6e-43 CL0016