LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0186	ATGTCCAATCACCAGGAGGATCTTGATCTCCTTCTCTCTCTCGAAGATAGGGTTTTGGAAACTCCTCCCCACTCACCAGGATACCTTTCTGATGATGGATCTCCAACGCGAACAAGGCAGTCAGACATGTCTGTCTTCAGAAATGCCGTCCAAGATTGTCTTGATTTTGAGCCTGAATCTGTGAAGAAAGCTCCCAATTTGAAGAAGAATGAGACTGACGTTGAGAAGTTTTCAGGTTTGCGTATAAGGAATCAACTGGTCTCCTCTGTTGAGCTTAGCAGCCAATTTTCAGATATTCGATTTGTTCGGCTATCAGCAATAAAGAATTTGCTGGTGGGGGACACCCTTTCAGGTTGTTGGGCGACCGTTGGTGTTTTGACTGAGAAGGGGAACCCAAAGACTAGTTCTGCGGGGAAGAACTATTGCATATGGAAAATTGGGTGCTTGGATGAAGACACTGTTAGTGTTTTCTTGTTTGGTGATGCTTATCAGAAGAACTGGAAAGAGCAGGCTGGAACAGTCTTTGCATTATTCAATTGCAGTGTTAGGAAGGATGCCATGGGAAATGGGTTTTCATTAAGTGTCTATTCTCCTGGTCAAATTTTAAAGTTGGGCACTTCAGTTGATTATGGAGTTTGCAAGGGAAAAAGGAAGGATGGGATGGCTTGTACACTAGTCATAAACAAGCGTCGTGGGGTGTATTGTAGATACCATAAATCGAAAGCATCTGAGAAATATTCCATAATGCGAACTGAGCTCAAAGGAGGGAACTTAAAGACAGCCTTTCGGGATCCTCTCAACTCAAAAGGAGTTTACTTAGTTGACCCCCTAGCTGATAAAACCAATGTAAAAAGGCCCATGCAGCCACTAAAGTTGTTATCAGTGGATGGACTGAAGAAGGCACTTAGCAATGCAGGTAAAGTGACAACAAATGCACACTCTCAAGGAATAAGGTTTCTAACTGAAATCACAGGGAAGGTGGGCTCAAAAATTACAAAAGAAGGATCAGGCCCTAACCAACAAGTGGCCAAGAGGCCATCAACAACCATTAGAACGGATTCGTCTGCAGTTGCAAGAAACCAGCAGCCTGGCACAAAAAGAAAGAAAATGGAGCAGGAGCAACCATCATCTGGAAAAGCCAAGATGGCTACAGAAAAGATGATCGAATTAGAATTTGTTAGTTCAGATGAAGAATTCTAG	1200	0.4308	MSNHQEDLDLLLSLEDRVLETPPHSPGYLSDDGSPTRTRQSDMSVFRNAVQDCLDFEPESVKKAPNLKKNETDVEKFSGLRIRNQLVSSVELSSQFSDIRFVRLSAIKNLLVGDTLSGCWATVGVLTEKGNPKTSSAGKNYCIWKIGCLDEDTVSVFLFGDAYQKNWKEQAGTVFALFNCSVRKDAMGNGFSLSVYSPGQILKLGTSVDYGVCKGKRKDGMACTLVINKRRGVYCRYHKSKASEKYSIMRTELKGGNLKTAFRDPLNSKGVYLVDPLADKTNVKRPMQPLKLLSVDGLKKALSNAGKVTTNAHSQGIRFLTEITGKVGSKITKEGSGPNQQVAKRPSTTIRTDSSAVARNQQPGTKRKKMEQEQPSSGKAKMATEKMIELEFVSSDEEF*	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0186	399	PANTHER	PROTEIN MCM10 HOMOLOG	33	372	IPR040184	GO:0003690\|GO:0003697\|GO:0006270
	Vvi3g0186	399	MobiDBLite	consensus disorder prediction	21	40	-	-
	Vvi3g0186	399	Pfam	Primase zinc finger	205	248	IPR015408	GO:0005634\|GO:0006260
	Vvi3g0186	399	MobiDBLite	consensus disorder prediction	329	399	-	-
	Vvi3g0186	399	FunFam	DNA replication licensing factor mcm10	66	240	-	-
	Vvi3g0186	399	Gene3D	-	65	239	IPR012340	-
	Vvi3g0186	399	MobiDBLite	consensus disorder prediction	333	362	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g0186	1	398	Core DNA Replication Machinery Family	AT2G20980	57.494	3.23e-151	431

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0186	K10736		-	vvi:100250259	786.949