Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0181 ATGTTTTTCGGTTTTCAAAATCCAAGCATAGAGTTAAAATTTTTGTCCACCTCCCGCCCACAAAAACGACGTCGTTTACATGCACAAATCTCCAAGGCGATCGCCCTCTTATCCTCCCTACCGCCAACGCCCATACCGTTGGCCTTATTATATGTTCAACAAAACGACGCGTTTAACAATTCCCAAGCTCACGATATCTCCTTAAACGACGCCGTTTGGCTTCCCCATCGCCGCTCAAAAACTCTATCTTATACCATTGGCCTCTCTTGCCCAATCCCCAGACCAATCACTCTCCTCATTTCTTCGAAGCTCAGCAGACGCCGAGTTTTGATGGCGTTACCCGTCGTTGACACAGACTACCTCAAGGAGATCGACAAGGCTCGTCGTGATCTCCGAGCTCTCATCGCCTCCAAGAACTGCGCTCCGATCATGCTCCGCCTGGCGTGGCATGATGCGGGGACGTACGATGTTCACACCAAGACTGGCGGCCCTAACGGCTCGATCAGGACTGAGGAGGAGTACTCTCATGGTTCGAATAATGGCTTGAAAATAGCTATTGATTTTTGCGAGGAAGTGAAGTCCAAATACCCAAAGATCACTTATGCAGACCTATACCAGCTTTCAGGAGTTGTTGCAGTTGAGATCACAGGAGGCCCCACCATTGACTTTGTACCTGGTAGAAAGGATTCAATGATTTCTCCCAAGGAAGGGCGGCTTCCAGCTGCCAAAAAAGGGGTATCACATCTTAGGGACATTTTTTACCGGATGGGCCTGTCTGGCAAGGATATTGTGGCATTGTCAGGAGGGCACACATTGGGAAGGGCACATCCAGAGCGATCGGGTTTTGATGGCCCTTGGACTAAGAATCCTCTGAAGTTTGATAACTCATACTTTGTGGAGTTACTGCAAGGGGAATCAGAGGGGCTGTTGAAACTTCCAACAGACAAGGCTTTATTGGATGATCCTGAGTTCCGTGGTTATGTTGAGCTGTATGCAAAGGATGAGGATGCATTCTTTAGGGACTATGCAGTATCTCATAAGAAACTCTCAGAGCTGGGGTTTACTCCTTCAAGTTCCTCCGGCTCCAAGGTCATTGCCAAAGACAGCACCGTATTGGCACAGAGCGCTGTAGGAGTTGTAGTTGCTGCTGCAGTGGTGATCCTGAGTTACTTCTACGAGGTTCGCAAAAGAATGAAGTAA 1200 0.485 MFFGFQNPSIELKFLSTSRPQKRRRLHAQISKAIALLSSLPPTPIPLALLYVQQNDAFNNSQAHDISLNDAVWLPHRRSKTLSYTIGLSCPIPRPITLLISSKLSRRRVLMALPVVDTDYLKEIDKARRDLRALIASKNCAPIMLRLAWHDAGTYDVHTKTGGPNGSIRTEEEYSHGSNNGLKIAIDFCEEVKSKYPKITYADLYQLSGVVAVEITGGPTIDFVPGRKDSMISPKEGRLPAAKKGVSHLRDIFYRMGLSGKDIVALSGGHTLGRAHPERSGFDGPWTKNPLKFDNSYFVELLQGESEGLLKLPTDKALLDDPEFRGYVELYAKDEDAFFRDYAVSHKKLSELGFTPSSSSGSKVIAKDSTVLAQSAVGVVVAAAVVILSYFYEVRKRMK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0181 399 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 115 358 IPR044831 GO:0004601|GO:0034599
Vvi3g0181 399 ProSitePatterns Peroxidases active site signature. 141 152 IPR019794 GO:0004601
Vvi3g0181 399 Gene3D - 127 353 - -
Vvi3g0181 399 ProSiteProfiles Plant heme peroxidase family profile. 141 399 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 Gene3D Peroxidase, domain 2 240 346 - -
Vvi3g0181 399 Pfam Peroxidase 128 334 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 ProSitePatterns Peroxidases proximal heme-ligand signature. 262 272 IPR019793 -
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 330 354 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 238 255 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 159 169 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 278 302 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 120 140 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 173 197 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 198 216 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 217 229 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 141 156 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Plant ascorbate peroxidase signature 256 277 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 FunFam L-ascorbate peroxidase, cytosolic 240 346 - -
Vvi3g0181 399 FunFam Cytosolic ascorbate peroxidase 127 247 - -
Vvi3g0181 399 SUPERFAMILY Heme-dependent peroxidases 119 358 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Haem peroxidase superfamily signature 141 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Haem peroxidase superfamily signature 199 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Haem peroxidase superfamily signature 217 229 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 PRINTS Haem peroxidase superfamily signature 286 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g0181 399 CDD ascorbate_peroxidase 114 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0181 Vvi-Chr3 1587828 1594603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0181 181 349 Peroxidase AT4G16270 32.857 8.63e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0181 K00434 - vvi:100246866 561.992