Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0180 ATGGGGAGGTCTCCTTGCTGTGAGAAAGCTCATACAAACAAAGGGGCATGGACCAAGGAGGAAGATGATCGCCTCATCGCTTATATCCGGGCACACGGCGAGGGCTGCTGGAGGTCTCTCCCCAAGGCCGCAGGCCTTCTCCGATGTGGGAAAAGTTGCCGCCTCCGATGGATAAACTACCTGAGGCCTGACCTCAAGCGGGGAAACTTCACCGAGGAAGAAGATGAACTCATCATCAAACTGCATAGTCTCCTTGGCAACAAATGGTCTCTTATAGCTGGGAGATTACCAGGAAGAACAGATAATGAAATAAAGAATTACTGGAACACCCACATACGGAGAAAGCTTCTGAACCGAGGCATCGATCCGTCTACTCATCGCCCCATCAACGAGCCCTCACCGGACGTTACAACCATATCTTTCGCAGCCGCAGTTAAGGAAGAGGAGAAGATCAATATCAGCAGTACTGGTGGATTTGGGTGCAAAACTGAGAAAAACCCAGTTACGGAAAAGTGTCCAGACCTCAACCTTGAGCTCAGAATCAGCCCACCATACCAACCCCAAGCTGAGACGCCATTGAAGACTGGTGGGAGGAGTAGCAGCACTACTCTTTGCTTTGCATGCAGTTTGGGAATACCAAATAGTGAGGAGTGCAGTTGCAGTATTGGTACTAGTAGTGGAAGCAGCAGCTCTGGGTATGACTTCTTAGGGTTGACATCTGGGGTTTTGGATTACAGAGGTTTGGAGATGAAATAA 756 0.4947 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPSTHRPINEPSPDVTTISFAAAVKEEEKINISSTGGFGCKTEKNPVTEKCPDLNLELRISPPYQPQAETPLKTGGRSSSTTLCFACSLGIPNSEECSCSIGTSSGSSSSGYDFLGLTSGVLDYRGLEMK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0180 251 CDD SANT 69 112 IPR001005 -
Vvi3g0180 251 SMART sant 66 114 IPR001005 -
Vvi3g0180 251 SMART sant 13 63 IPR001005 -
Vvi3g0180 251 CDD SANT 16 61 IPR001005 -
Vvi3g0180 251 FunFam MYB transcription factor MYB48 69 166 - -
Vvi3g0180 251 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi3g0180 251 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi3g0180 251 Gene3D - 69 133 - -
Vvi3g0180 251 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi3g0180 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi3g0180 251 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi3g0180 251 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 148 - -
Vvi3g0180 251 Gene3D - 14 66 - -
Vvi3g0180 251 FunFam MYB-related transcription factor 13 66 - -
Vvi3g0180 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi3g0180 251 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0180 Vvi-Chr3 1584232 1585073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0180 1 251 MYB Transcription Factor Family AT4G38620 62.630 9.82e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi3g0180 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0180 K09422 - vvi:100233133 496.508