Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0175 ATGGTGAAGAAATCTAACCTGCTTGAAAGCAAAATGACTCTAGAAGATTTCTTTACCCTGACTGAGATGAAGGATGGTCTTATGGTCCTGTCTAGAGTTGAGGAGCTGGTAAGAGTAATGCAGAAGGATAGCAATTGCGTTGTGAAGAATTTTCCTGAGGCAGCCAGACAGTGGTCTGCTGTTGCAAGTGCCTTGGCAGCCACTGAGAATAAGGATTCTCTTGATCTTTTTATTCGGTTAGATGGAATCCGGTTTCTTAAACACTGGCTTCAGGAAGCTCAAAAGTGTACCGAGGACAACATCGATTGCTCTGTGGAAGAATCAATCACTTCATTGTTAGGAGCACTTGAAAAGCTGCCTATTGATCAGGAATGTTCAAAATCTTCTGGGATTGAAGTTACTGTTAAGAATCTTTTTGGTCACAAGAGCTCAAGGGTTGTGGATAGGGCAAAGGCTCTGTATCATAGTTGGAACAAAGGAAGGAACAGTGATTCAGATAACTCAAATGTTGTCAGAGATGGCACCTGCTATGATAATGAGGTTTCAGCTTCTGCAGTAGTTGCTGTGGAGAGTGGAAGTTCTGAACATTCTGCTGTTGAAATTTCTTCATTAAGAGAAAATGGCAATGCAGAGAAAGCTGGTGAAGAGAATTTTTCTACTAAGACAGAATTTTCAACACCTCCTGAAGGGACTGCCTCCACTGAGGCACTTGATTGTTCAGTTTCTGGAAAAGGTGATATTGAAGAGAGCTTGGATGCCTCAAAGCCTAAAGATTCCACTGATGATGTGAAGAGGACAAAATTCTCAGAGGGTTGCATGCTTGGTCCAATGGAAGTTTCTTCTGATGCTGTTACATCAATGCCTGTGTGTAGTTCTTCACCTTCTGATTATCCAAGTCAGGGGTCTGATAAAAACCCTGATGTACCAAGTCATCTCGATGTCAAAGTGAGAGACTCCTGTCCTAAGAGCTGTCCTGACAGTGATCTGAACATGATTGCGTCTGAGTCTAGTAAAATGAAAGTGAAACATAAAGCTACAGGTGAATGTGGTGAATGCCTTCCAAATGTTTTGCGGGACTTGACTTGTGAAGTGGACAGCTTGAGTAAACCGGAGAATCCTGAGTCTTCTTTTTCAAGAGCTGAAGATACTAGTTCTGTCAAAGATGTTGGCGAGTTGAGCATGGAGGTGGGCAGAGGGGAAGATTCAGTAATCACAGATAATCTGTCAAAGCTGAAGACAGTCACCAAAGATTCTGATAGGATGGATGGTAGGTTGCAATCTGAGCCCAAATGTGCAGTTAATGATGATGCTTTAGAAGTTGCTCAGCGAATTGCTGGTGAGTTGGAGGAAGAATTGGGGAATTACAGTGAGCCATTCTGCAGCTCTTCAGAGAAAAGATATAGTAAGATGGATCAACCTGGTAGCCCTGATTCTGTCAATGGAAAACCAGTACATGGAACAGAAGCTACACAAAATCTTTCAGGTGGGGCTTCTCATTGCGAAGGAAATAATGTGGACACTGAACCTGAAGATTGCATTCAAGACACAGTTTCATCCTTGGTAACTGGGAATGCTCAAGAAGTGGCCAGTAATTCTGGGAAAGGCATGTTGGGTTTTGATCTGAATGAAGAAATTTACCCTGAGGAAATGGATTGCCCTAAAACTCCCATGTCTGCTCCCATTTCCATTCTTGCCACATCAGGACCACCAGCAGTTGCTAGGCCACCGTTGGTTCCTATACAGGTTGAAGGGGGCTCTGCTGTTACCAGTGCCTTCCATCCTGCAGATCTAGAAAAAACATCTGACGTTTATAAGACGGTATCTGCTGAGGGAAGCAGCTACAGTTTGAAGCAGAGGCAGGACTTGCTTGAGATTGATCTGAATGTGGCTGATGATGGTGTTGATGGAGCAGCTGATACAATAATTACGGATCAGATCCCTGCTTCATCTGGCATAATTTCTGGTGAGTCTTTGGTTGAAGTGAACTCAAAGCGGGCAGAGAGGCTTAATTTGGACCTGAATCGTGTTGGTGATGATGATGATGCTCCATCATCGCATAGGAGGGAGGTGGACTCCTTTTATCATAATCTGGATGAGCATCGTAGTCCCTCACATGCTGCCTCATCATCATCTAGGCAACCTTCAATGATTAACATTGACTTGAATGAAAATCTTTCTTTCACTAATGATATGTATGACCAACAGAATGATCTTGGGCAATCATCTTCGAAAGAAATGAGTGCTTCTGTAGGGTTTAAGCAGGAGGATTCCGATGTTCTGATTATTGGCTCTAGGGCACCAGTTAATGGAAGGAACTTCACACCATCCCAGTCTCTTCTGCTAAATGGGCAGGTTGGCAATTCATCAAGGGGCACCAACTTGGCAAGGCCTCAAGGTGTCATGGAGTTTCGGCATCCAGTGGCTTGTGCATCCTCGCCATTTGGGTACAGTGGATTTATAATGGGACCCTCTATGACTCTCTCCACTGTGTCCGGACCAGGCTCCATCCCCTACATGATAGATTCAAGAGGAGCTCCTATAGTACCGCAGATAATGGGTTCTGCAGTGACCTTTCCTCCTTCATGCTCTCCGCAGCCATTCCTAATGGGCATGAATTCCCAACCATTTCATGTGAATGGAGTTAAGCCTGCTAAGGCTGGTTTTGATCTGAATTCTAGCTTGATGGTGGAAGGTGGGAACAGGGAAACTGGGGCTTTGAGGCCAGGGCAGAGTCAGTTGATGGAGGGGTCTATGTGGTCCACTTCACAGTGCTTGAATTCTGGGATTGGAATGAAACGGAGTGAACCAGATGGTGGCATGGAACATTATCCATTCAGTTACAAACAGCAAAGGGTATGGCAGTAG 2865 0.4447 MVKKSNLLESKMTLEDFFTLTEMKDGLMVLSRVEELVRVMQKDSNCVVKNFPEAARQWSAVASALAATENKDSLDLFIRLDGIRFLKHWLQEAQKCTEDNIDCSVEESITSLLGALEKLPIDQECSKSSGIEVTVKNLFGHKSSRVVDRAKALYHSWNKGRNSDSDNSNVVRDGTCYDNEVSASAVVAVESGSSEHSAVEISSLRENGNAEKAGEENFSTKTEFSTPPEGTASTEALDCSVSGKGDIEESLDASKPKDSTDDVKRTKFSEGCMLGPMEVSSDAVTSMPVCSSSPSDYPSQGSDKNPDVPSHLDVKVRDSCPKSCPDSDLNMIASESSKMKVKHKATGECGECLPNVLRDLTCEVDSLSKPENPESSFSRAEDTSSVKDVGELSMEVGRGEDSVITDNLSKLKTVTKDSDRMDGRLQSEPKCAVNDDALEVAQRIAGELEEELGNYSEPFCSSSEKRYSKMDQPGSPDSVNGKPVHGTEATQNLSGGASHCEGNNVDTEPEDCIQDTVSSLVTGNAQEVASNSGKGMLGFDLNEEIYPEEMDCPKTPMSAPISILATSGPPAVARPPLVPIQVEGGSAVTSAFHPADLEKTSDVYKTVSAEGSSYSLKQRQDLLEIDLNVADDGVDGAADTIITDQIPASSGIISGESLVEVNSKRAERLNLDLNRVGDDDDAPSSHRREVDSFYHNLDEHRSPSHAASSSSRQPSMINIDLNENLSFTNDMYDQQNDLGQSSSKEMSASVGFKQEDSDVLIIGSRAPVNGRNFTPSQSLLLNGQVGNSSRGTNLARPQGVMEFRHPVACASSPFGYSGFIMGPSMTLSTVSGPGSIPYMIDSRGAPIVPQIMGSAVTFPPSCSPQPFLMGMNSQPFHVNGVKPAKAGFDLNSSLMVEGGNRETGALRPGQSQLMEGSMWSTSQCLNSGIGMKRSEPDGGMEHYPFSYKQQRVWQ* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0175 954 MobiDBLite consensus disorder prediction 367 386 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 200 238 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 484 501 - -
Vvi3g0175 954 ProSiteProfiles TFIIS N-terminal domain profile. 84 164 IPR017923 -
Vvi3g0175 954 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 12 954 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 245 264 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 694 715 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 457 505 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 248 264 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 284 320 - -
Vvi3g0175 954 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 26 162 IPR035441 -
Vvi3g0175 954 Pfam TFIIS helical bundle-like domain 112 159 IPR017923 -
Vvi3g0175 954 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 73 168 IPR035441 -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 457 475 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 219 238 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 284 306 - -
Vvi3g0175 954 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0175 Vvi-Chr3 1543989 1546853 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi3g0175 Med26 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0175 - - vvi:104878379 1845.86