Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0171 ATGCGTCGAGAAATTTCGATTTTGCTTCAGCCACGATGGATTCTTCCCATTCTCATCGCCACTATTTTACTCATTCTTTTCCTGTCCGTTTACCCTAGGGGGGAAGAGACGGCAGAAGAGGTGCCTGAAATTACTCACAGAGTGTTCTTGGATATCGATATTGATGAACAACATATAGGTAGAATAGTTATTGGTCTGTATGGCAATGTTGTACCAAAAACTGCTGAAAACTTCCGGGCTTTGTGCACAGGGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACACCATTTCATCGTATAATATCCGGATTCATGATCCAGGGTGGAGATACTGTCCATGGCGATGGGAGAGGGAGTGAGTCTATATATGGTGGCACATTTCGAGATGAGAATTTCAGGATAAAACATTCACATGCAGGTGTTGTTTCCATGGTGAATTCAGGACCTGATTCTAATGGCTCTCAGTTTTTCATCACCACAGTCAAGGCTAGCTGGTTGGATGGGGAGCATGTTGTATTGGGCAAGGTTATTCAAGGCATGGACATTGTCTACACAATAGAAGGTGGAGCTGGAACCTACAATGGAAAACCCAGGAAGAAGGTCGTTATCTCAGACTCGGGCGAGATACCCAAGAGCGATTGGGAAGAAGAAAGCTGA 672 0.4479 MRREISILLQPRWILPILIATILLILFLSVYPRGEETAEEVPEITHRVFLDIDIDEQHIGRIVIGLYGNVVPKTAENFRALCTGEKGKGASGKKLHYKGTPFHRIISGFMIQGGDTVHGDGRGSESIYGGTFRDENFRIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVLGKVIQGMDIVYTIEGGAGTYNGKPRKKVVISDSGEIPKSDWEEES* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0171 223 FunFam Peptidyl-prolyl cis-trans isomerase 34 220 - -
Vvi3g0171 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 47 214 - -
Vvi3g0171 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755|GO:0006457
Vvi3g0171 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
Vvi3g0171 223 Gene3D - 36 220 IPR029000 -
Vvi3g0171 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 210 IPR002130 GO:0000413|GO:0003755
Vvi3g0171 223 SUPERFAMILY Cyclophilin-like 42 214 IPR029000 -
Vvi3g0171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Vvi3g0171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Vvi3g0171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Vvi3g0171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Vvi3g0171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0171 Vvi-Chr3 1512511 1518020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0171 60 208 U-box Gene Family AT5G67530 41.333 1.40e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0171 - - vvi:100255625 442.58