Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0170 ATGGGCTTCCACCTATCTCCAGCGTCCTCCTCCAGAAAATGGCTGGGGTTTGTGACGGCCGTTTGGGTTCAGTCCATCTCCGGCAACAACTACACTTTTTCCAACTACTCAGATGCTCTCAAATCGTTAATGGCTCTCACCCAGTTGCAACTCAACAACCTCTCTGTTGCCAAGGATGTGGGCAAGGCGTTTGGCCTCCTCTCCGGTCTCGCCTCCGACCGGTTGTCCACTCCGATGATGCTTCTTATTGGGTCGATTGAAGGGCTTGTCGGGTATGGGGTTCAATGGCTGGTCGTCAGCCGGAAAATCCAGCCGCTTCCCTATTGGCAGATGTGTATATTTCTATGCATGGGAGGCAACAGTACGACATGGATGAACACGGCGGTTCTGGTGACATGCATCCGAAACTTCCGGACGAATCGAGGTCCGGTCTCCGGAATATTGAAGGGTTACGTGGGTCTGAGCACCGCCATTTTCACTGACCTCTGCACTGCTCTCTTTGCCGACGACCCCGCCATCTTCCTCCTCATGCTCGCCATCATCCCCCTTCTTGTCTGCCTCTCCGCTATTCTCTTCCTCCGCGAGGTCCCTTCGTCGTCCACCGCAGCCGGCGAGAAGGAAGAGACCAAATTCTTCAACCTCTTCAACATCGTCGCCGTCGTCCTCGCCGTCTATCTCCTCACCTTCGACGTCACCGGCTCCCATAGCCGCATCCTCTCTCAGGCATTCGCCGTCGTCCTGCTCTTCCTCCTGGCTTGCCCTCTCTCAATCCCTCTCTATTTCATGCTACAGGATTTTAACCGGTCCGGTTCAAAACCCAGTTCCGACATCGAGGGTCTAATCACCGAAACCCTCCTGAGTCAAAACAGTCAGCCGGAAATGGCGGCTCCGGCATCGGAGGAAAAGGTGGAGCCTGTGGTGGAAATCAAACGACCCCGGCCGTCAATTGGGGAGGATCACACAATTATTGAAGCAATCAGCACCACTGATTTCTGGATACTCTTTGCATCCTTCCTCTGTGGAGTTGGCACTGGTTTGGCTGTTATGAATAACATGGGACAAATGGGTCTAGCTCTCGGCTACGTGGATGTCTCCATTTTCGTCTCCCTCACAAGCATTTGGGGATTTTTCGGCCGAATTTTATCCGGTTCAGTTTCAGAATACTTCATAGGAAAAGCTGGAACACCAAGACCTTTCTGGAATGCAGCTTCTCAGATTCTGATGGCAGTTGGGTATGTTGTGATGGCCATGGCTTTGCCTGGCTCACTATACATTGGTTCAGTCGTGGTAGGGATTTGCTATGGAGTTCGTCTCGCTGTCACAGTCCCCATTGCTTCTGAACTGTTTGGCCTGAAATATTATGGTCTCATCTACAACATTCTAATCCTCAACCTCCCCCTTGGCTCCTTCCTCTTCTCCGGCCTGCTTGCTGGCTTGTTGTATGACGCCCATGCTACCCGCACAGCAGGAGGTGGCACCACATGCATAGGCCCCCACTGTTACAGGCTGGTGTTCGTGGTAATGGCCTTATCATGCATTATCGGGTTTGGCTTAGACGTCCTACTGGCAATTAGAACAAAGAATGTTTACTCCAAGATTCGCGCGAGCAAGAGATCAAAGAAGCCAGCGGCCCCATCCAACAGCCGATAA 1650 0.5242 MGFHLSPASSSRKWLGFVTAVWVQSISGNNYTFSNYSDALKSLMALTQLQLNNLSVAKDVGKAFGLLSGLASDRLSTPMMLLIGSIEGLVGYGVQWLVVSRKIQPLPYWQMCIFLCMGGNSTTWMNTAVLVTCIRNFRTNRGPVSGILKGYVGLSTAIFTDLCTALFADDPAIFLLMLAIIPLLVCLSAILFLREVPSSSTAAGEKEETKFFNLFNIVAVVLAVYLLTFDVTGSHSRILSQAFAVVLLFLLACPLSIPLYFMLQDFNRSGSKPSSDIEGLITETLLSQNSQPEMAAPASEEKVEPVVEIKRPRPSIGEDHTIIEAISTTDFWILFASFLCGVGTGLAVMNNMGQMGLALGYVDVSIFVSLTSIWGFFGRILSGSVSEYFIGKAGTPRPFWNAASQILMAVGYVVMAMALPGSLYIGSVVVGICYGVRLAVTVPIASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGLLYDAHATRTAGGGTTCIGPHCYRLVFVVMALSCIIGFGLDVLLAIRTKNVYSKIRASKRSKKPAAPSNSR* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0170 549 Gene3D MFS general substrate transporter like domains 10 206 IPR036259 -
Vvi3g0170 549 SUPERFAMILY MFS general substrate transporter 63 529 IPR036259 -
Vvi3g0170 549 Pfam Nodulin-like 13 258 IPR010658 -
Vvi3g0170 549 CDD MFS_Mch1p_like 13 515 - -
Vvi3g0170 549 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0170 Vvi-Chr3 1502460 1506275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0170 13 541 Nodulin-like Gene Family AT4G34950 70.000 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0170 - - vvi:100260696 1029.24