Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0164 ATGAGTAGAGTGACCGGGACTGTGAAGTGGTTCAATGACCAGAAGGGGTTTGGGTTCATCACCCCCGACGACGGCGGCGATGATCTGTTTGTGCACCAGTCCTCGATCAGATCCGAAGGCTTTCGGAGCTTAGGAGAAGGCGAGGCGGTTGAGTTCGTGGTGGAGTCCAGCGACGACGGGAGGACCAAGGCGGTAGATGTTACTGGACCGGATGGCAACCCTGTTCAGGGCAGCCGCGGAGGAGGTGGCGGAAGAGGTGGGCGAGGCGGTGGGGGTTATGGTGGTGGTGGTGGATACGGCGGCGGGGGCGGTGGGTATGGTTATAACGGCGGTGGAGGACGCGGTGGTGGTAGAGGAGGCCGCGGTGGCGGTGGAGGTGGAAGGAGTAGTGGCGGCTATGGCGGCGGCGGATATGGAGGCGGAGGCGGATATGGAGGTGGAGGCGGAGGCGGAGCTTGTTACAACTGCGGAGAGGAGGGCCATCTCGCAAGGGACTGCAGTCAGAGTAGCGGCGGCGGAGGAGGCGGTGGCCGATACAGTGGCGGAGGCGGAGGCGGTGGAGGCGGCGGTGGCGGTGGCGGTGGCTGCTACAGGTGCGGAGAAGCAGGCCATTTCGCTCGCGAGTGCCCTAACAATGCCCGTTAA 645 0.6434 MSRVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDGRTKAVDVTGPDGNPVQGSRGGGGGRGGRGGGGYGGGGGYGGGGGGYGYNGGGGRGGGRGGRGGGGGGRSSGGYGGGGYGGGGGYGGGGGGGACYNCGEEGHLARDCSQSSGGGGGGGRYSGGGGGGGGGGGGGGGCYRCGEAGHFARECPNNAR* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0164 214 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 212 - -
Vvi3g0164 214 SMART csp_8 5 70 IPR011129 GO:0003676
Vvi3g0164 214 Pfam 'Cold-shock' DNA-binding domain 4 69 IPR002059 GO:0003676
Vvi3g0164 214 Gene3D - 148 175 - -
Vvi3g0164 214 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Vvi3g0164 214 CDD CSP_CDS 4 69 IPR002059 GO:0003676
Vvi3g0164 214 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
Vvi3g0164 214 ProSiteProfiles Zinc finger CCHC-type profile. 196 211 IPR001878 GO:0003676|GO:0008270
Vvi3g0164 214 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
Vvi3g0164 214 Gene3D - 1 80 IPR012340 -
Vvi3g0164 214 SUPERFAMILY Retrovirus zinc finger-like domains 143 212 IPR036875 GO:0003676|GO:0008270
Vvi3g0164 214 Pfam Zinc knuckle 195 211 IPR001878 GO:0003676|GO:0008270
Vvi3g0164 214 Pfam Zinc knuckle 152 168 IPR001878 GO:0003676|GO:0008270
Vvi3g0164 214 FunFam Cold shock protein 1 1 68 - -
Vvi3g0164 214 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Vvi3g0164 214 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Vvi3g0164 214 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Vvi3g0164 214 MobiDBLite consensus disorder prediction 61 88 - -
Vvi3g0164 214 Gene3D - 190 214 - -
Vvi3g0164 214 ProSiteProfiles Zinc finger CCHC-type profile. 153 168 IPR001878 GO:0003676|GO:0008270
Vvi3g0164 214 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Vvi3g0164 214 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0164 Vvi-Chr3 1468355 1468999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vvi3g0164 CSD 8.4e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0164 - - vvi:100259004 159.073