Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0162 ATGGCTTCGTCTTCATCGCTTTATGAGGTTCTTGGGATTCCGGTGAGCGCCTCCGGGAACGAGATAAAGGCGGCGTACCGGAGGCTGGCGAGAGTGTGCCATCCGGATGTTGTAGCGATGAACCAGAAGGAGACTTCAGCTAACGAGTTTATGAAGATACATGCAGCCTACTCCACCTTGTCGGACCCTGATAAGCGAGCAAATTATGACCAGGATCTTTTCAGGCGGCGCCGGCCGGTGATGGCCACCGCCATGAGAACCGGCGGTTCCTCTTTTTCGGGCTTTTCTCGCCGGACTTGGGAGACTGACCAGTGCTGGAATCGTTGCATGAAAATCAACAAAAAGGAATACACCGATCCTTTTAAACTATTGCTCAATGGTAAAAATGATTGGTTTCTGTTTGTCAAAATCAAGCCCATTGTTCAGATGCCAAAACCCGACCCAAGCCCGACATGA 456 0.5066 MASSSSLYEVLGIPVSASGNEIKAAYRRLARVCHPDVVAMNQKETSANEFMKIHAAYSTLSDPDKRANYDQDLFRRRRPVMATAMRTGGSSFSGFSRRTWETDQCWNRCMKINKKEYTDPFKLLLNGKNDWFLFVKIKPIVQMPKPDPSPT* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0162 151 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Vvi3g0162 151 CDD DnaJ 8 62 IPR001623 -
Vvi3g0162 151 SUPERFAMILY Chaperone J-domain 3 85 IPR036869 -
Vvi3g0162 151 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Vvi3g0162 151 Gene3D DnaJ domain 3 122 IPR036869 -
Vvi3g0162 151 PRINTS DnaJ domain signature 45 65 IPR001623 -
Vvi3g0162 151 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vvi3g0162 151 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vvi3g0162 151 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 106 - -
Vvi3g0162 151 SMART dnaj_3 5 65 IPR001623 -
Vvi3g0162 151 Pfam DnaJ domain 7 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0162 Vvi-Chr3 1449449 1451521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0162 1 70 C2H2 Transcription Factor Family AT1G74250 44.304 2.61e-10 55.8