Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0134 ATGGATCATCAGAACCCCGAAGCTTTCTGCCAGTCCACTCACTACCCACCTCCTGACCCGCGTGTCTCCTCCACTCGCTCACACCCAGACTCCAGCAAGAGGTCTGAGGGGGAATTCAAGGATTTTGTTACTGCAAGGAAGGTTCAGAAGGCTGATAGGGAGAAATTGAGGAGGGATCGGTTGAATGAGCAGTTTATAGAGTTGGGAAATGCCTTAGATCCTGATAGGCCCAAAAATGATAAAGCAACCATTCTTTCTGATACAATTCAATTGCTCAAGGACTTGACAGCCCAAGTTGAGAAACTGAAAGCTGAGAATGCATCACTAAATGAAGAATCCCGTGAGTTAACTCAGGAGAAGAATGATCTCAGAGAAGAGAAGGCATCCCTCAAATCGGCTACTGAGAACCTTAATGTTCAGTATCAACAGAGACTCAGAGCTATGTTCCCATGGTCTGCCATTGATCCCTCAGTTGTTGTAAGTCCACCTTCTTACCCGTTTCCAGTGCCAGTCCCAGTGCCTATCCCTACAGGTTCAATTCCCATGCATCCATCTATGCAGCCATATCCTTTCTTTGGAAGTCAGAACACTGGGATCATTCCTAACCCCTGTTCGACTTTTGTTCCATACTTTACTCCAAATACCCTGATTGAACCACAGTCAACACAACATGTATCTCCACCTATGCAACCAGGCAGTACGTCCAACATTTCAAGCAAACAGGATTCCAAGAATGAGTCACCAGGGGAGAGCAAGAGTGAAAAAGGTGAAGATTCTACTGATGTTGCAACAGACCTGCAGCTCAAGACACCTGGATCTAAATCTGATCAGGAAGTATCATCAGGGCAACAGCAACACAAACCCAAGAGATCTCTGAGTAAGGAAAAGAACAGTACAGAAGGGAGCTCTTCAAGTAGGTGTTCTTCGTCTCCTAGTGTACAGGATAGCTCCTCAAATAGTGTAGTTGGTGGCAGAAAGGCTGACGACTGA 990 0.4596 MDHQNPEAFCQSTHYPPPDPRVSSTRSHPDSSKRSEGEFKDFVTARKVQKADREKLRRDRLNEQFIELGNALDPDRPKNDKATILSDTIQLLKDLTAQVEKLKAENASLNEESRELTQEKNDLREEKASLKSATENLNVQYQQRLRAMFPWSAIDPSVVVSPPSYPFPVPVPVPIPTGSIPMHPSMQPYPFFGSQNTGIIPNPCSTFVPYFTPNTLIEPQSTQHVSPPMQPGSTSNISSKQDSKNESPGESKSEKGEDSTDVATDLQLKTPGSKSDQEVSSGQQQHKPKRSLSKEKNSTEGSSSSRCSSSPSVQDSSSNSVVGGRKADD* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0134 329 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Vvi3g0134 329 MobiDBLite consensus disorder prediction 263 287 - -
Vvi3g0134 329 MobiDBLite consensus disorder prediction 218 244 - -
Vvi3g0134 329 MobiDBLite consensus disorder prediction 26 55 - -
Vvi3g0134 329 Gene3D - 44 124 IPR036638 GO:0046983
Vvi3g0134 329 Coils Coil 85 140 - -
Vvi3g0134 329 MobiDBLite consensus disorder prediction 106 127 - -
Vvi3g0134 329 MobiDBLite consensus disorder prediction 218 329 - -
Vvi3g0134 329 PANTHER TRANSCRIPTION FACTOR BHLH121 20 328 IPR044579 GO:0003700|GO:0006879
Vvi3g0134 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 115 IPR036638 GO:0046983
Vvi3g0134 329 MobiDBLite consensus disorder prediction 297 323 - -
Vvi3g0134 329 MobiDBLite consensus disorder prediction 245 262 - -
Vvi3g0134 329 MobiDBLite consensus disorder prediction 1 55 - -
Vvi3g0134 329 SMART finulus 51 101 IPR011598 GO:0046983
Vvi3g0134 329 CDD bHLH_AtILR3_like 50 124 - -
Vvi3g0134 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0134 Vvi-Chr3 1252448 1255340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0134 35 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.757 2.24e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi3g0134 HLH 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0134 - - vvi:100257183 573.933