Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0127 ATGGCGATAGACTCTGTGATTTCCTTTGCTGTTAAAAGGATCGGTGACACGCTCATTCAAGAGGCAACTTTGTTGAAGGGGGTGCGCGGGGAAGTCGAGAGGCTGCAGAAAGATCTAAGGGCGATGGAATGCTTCTTGGAAGAAGCGGAGAAGAAGCAAGAAGAAGATGTAGGAGTGCGCAACTGGGTTTCTGAAATCCGGGAAGCTGTTTATGAAGCTGAGGACATCATAGACATGTTCATCGTGAATGCAGAGTCCCTGAGACCAAGCTATTTTCAAAAGTTGACAAAGCGCCATCAGGTTGGCAAGAAAATTGAAGCCATCCGACTCAACCTCCAAGACATCTCAAATAGGCGGGAGGCTCTCCAGATAACAAATACTAGAGAAGGAACAAGCAGTTCGGATCAAATGTTGCAGGTTCGAAGATGCAACCTTGCTAATCAAGCAGAAGAACATGTCGTGGGCCTCACAATGGTGGCAGATAAGCTAGTGAAGCAGCTCACCGTAGGAGACCAAAGGTGCCGCGTGATTTCTTTAGTAGGAATGGGCGGCATAGGCAAAACCACCCTTGCCAAGACGGTTTATAAAAATGAAGAAATTGCGAAACACTTTCCAGATTGTTGTGCCTGGGTTTATGTGTCCCAACCTTGTAGACCTAAAGACGTTTATATGCAAATTATTAAACAGGTTTCTACATCCACTCAAGAGGAAGTAGAGAGGATGCAGAAATGGGAAGAGCGCGCGTTGGGGGATTTCCTTTATGAACATCTGACGAATAAAAGATATTTAATAGTTCTGGATGATGTATGGAGCTGTGACGATTGGTATTGTCTTGCAAAAGTGAGCCACAGAAATCGCCATGGAAGCGTGTTCCCTGATAGCTGTAATGGTAGTAGATTACTTCTTACAACTCGAGATGCGAATGTTGCTTCTGTTGCAGATGCTCATACTACTCCCTTTGAAATGCAGTTGCTTTCCAAACCACAGAGCTGGGACTTGTTTTATCGGGAGGCGTTCGGTGTTGCTAAAGACAAGAGCTATCCTCCAGATTTGATGGAACTTGGGGAAAAGATAGTGGAGAAATGTCAAGGGTTACCGTTGGCCATTGTGATATTGGCAGGTTTGTTGAAAAACACGCCATATACGGAATGGAAGAAGGCGCACGATGACGTTAGTGCATACCTTTCTGACAAAGACCACGTGGGAGTAATGGAAATGCTAAATTTGAGCTACATCAGTTTGCCCCATTACTTGAAACCGTGCTTTCTTTATTTAAGCCTTTTCCCAGAAAATTATGTGATTTCCAAAAGAAAACTGCTCCTTCTATGGATCGCTGAGGGTTTTGTCCTAGGGCAAAATCAACAAAGCATGAAAGGCATGGCTGAGAATTCCTTGGACGAGTTAATCCATAGAAACTTGATTCAAGTCGTCAGAAAAAGTGTTAATGCGAGGGTTATGGAATGTCGAGTTCATTACTATGTACGAGACTTGGCTATTCGAAAGGCAAAAGAGCAAAACTTCATTGGAACTAATGCAGATCCTCTATCCGCCTCAACTAGTTCATCTCTCTCTTCATACAAATCCCGTCGGCAAAGTATTTATTCCGACTTTGAGAGGTATGCTGCCATTGAACACTCAACTCCATATCTTCGCTCTCTCTTATTTTTCAATTTGGGGCATGGAACTAGTAGAACATTGCAACTAGAGTTTATTGGCAAATGCTTCAAAGTGCTTAGGGTGCTAGATTTGGAAGGTTTAGAGATCAAAAGCCTACCAAGTATAGTTGGGAAACTGATTCATTTAAGGTACTTGGGGTTAAGGCTTATGGGTGTGAAAATGCTTCCATCATCTATAGGCAACTTAAGGAGTTTGCAGACTTTGGATGTGAAAAATCTCAAACGAGTCCCAAATGTGATATGGAAGATGATAAACTTGCGATATGTTTATATAGAGGGGCAAGAGGATGATGTGCCATTGAAAATTGATACTCTGCAAAATCTTCGGATTCTATCAGGCATAAGCTTCAAGCAGTGGAGCCAGAATGATTCAAGCAAGTTAACTTGTCTTGAGAAATTGAAATTAGAAGCAAGATGTGATATAGAACGGGATGAGTTTTCAAACTCCATTGCCAGGTTGCTTAATCTTACATCCTTGTACCTTAAGGCATCGGAAGAGTCCATCATTCCAGCCGGCCTTATCATGAACTCTTGGCTCAAACTCTCTAAGCTCGAAATAAAAGGACGTATGTTGTTGTCCGAAGCCGGTCAATTCCCTCCAAATCTCATACAATTGACATTGGAAGCGTCTAAGTTAAATTATGATGTTGTGCCCATTTTGGGGAAACTTCCAAAGTTGTTGAATCTTAGATTAAGGGCAGAGTCATATCTTGGAGAGGAAATGCATGTGTCTGCAAGCTGGTTTGTTCGACTCAAAGTACTTCAAATTGATGAGTTAACTGGATTGACCAGGTTGAATATAGACGAAGGTGCACTGCCATGGCTTAAGCAATTACAAGCTTACTATGGAACGAAAATCTTGGGCATTAATAATCTCCTAAATCTGGTGGATTCAAGAGTCTTGATTGAACGAGATCATTTGTTAGTGCCTATCCAGATGCCTTACCCCAACAGCCCCATACATTTTCCTTGGGATTGTGCATGGTAA 2664 0.4242 MAIDSVISFAVKRIGDTLIQEATLLKGVRGEVERLQKDLRAMECFLEEAEKKQEEDVGVRNWVSEIREAVYEAEDIIDMFIVNAESLRPSYFQKLTKRHQVGKKIEAIRLNLQDISNRREALQITNTREGTSSSDQMLQVRRCNLANQAEEHVVGLTMVADKLVKQLTVGDQRCRVISLVGMGGIGKTTLAKTVYKNEEIAKHFPDCCAWVYVSQPCRPKDVYMQIIKQVSTSTQEEVERMQKWEERALGDFLYEHLTNKRYLIVLDDVWSCDDWYCLAKVSHRNRHGSVFPDSCNGSRLLLTTRDANVASVADAHTTPFEMQLLSKPQSWDLFYREAFGVAKDKSYPPDLMELGEKIVEKCQGLPLAIVILAGLLKNTPYTEWKKAHDDVSAYLSDKDHVGVMEMLNLSYISLPHYLKPCFLYLSLFPENYVISKRKLLLLWIAEGFVLGQNQQSMKGMAENSLDELIHRNLIQVVRKSVNARVMECRVHYYVRDLAIRKAKEQNFIGTNADPLSASTSSSLSSYKSRRQSIYSDFERYAAIEHSTPYLRSLLFFNLGHGTSRTLQLEFIGKCFKVLRVLDLEGLEIKSLPSIVGKLIHLRYLGLRLMGVKMLPSSIGNLRSLQTLDVKNLKRVPNVIWKMINLRYVYIEGQEDDVPLKIDTLQNLRILSGISFKQWSQNDSSKLTCLEKLKLEARCDIERDEFSNSIARLLNLTSLYLKASEESIIPAGLIMNSWLKLSKLEIKGRMLLSEAGQFPPNLIQLTLEASKLNYDVVPILGKLPKLLNLRLRAESYLGEEMHVSASWFVRLKVLQIDELTGLTRLNIDEGALPWLKQLQAYYGTKILGINNLLNLVDSRVLIERDHLLVPIQMPYPNSPIHFPWDCAW* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0127 887 Coils Coil 105 125 - -
Vvi3g0127 887 Pfam NB-ARC domain 160 411 IPR002182 GO:0043531
Vvi3g0127 887 PANTHER DISEASE RESISTANCE PROTEIN RP 35 824 IPR044974 GO:0006952
Vvi3g0127 887 FunFam Probable disease resistance protein At1g61300 135 318 - -
Vvi3g0127 887 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vvi3g0127 887 Gene3D - 324 409 IPR042197 -
Vvi3g0127 887 Coils Coil 32 52 - -
Vvi3g0127 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 425 IPR027417 -
Vvi3g0127 887 CDD RX-CC_like 4 117 IPR038005 -
Vvi3g0127 887 Gene3D - 133 321 IPR027417 -
Vvi3g0127 887 Gene3D - 6 120 - -
Vvi3g0127 887 FunFam Probable disease resistance protein At1g63360 411 500 - -
Vvi3g0127 887 SUPERFAMILY L domain-like 533 855 - -
Vvi3g0127 887 PRINTS Disease resistance protein signature 619 635 - -
Vvi3g0127 887 PRINTS Disease resistance protein signature 176 191 - -
Vvi3g0127 887 PRINTS Disease resistance protein signature 362 376 - -
Vvi3g0127 887 PRINTS Disease resistance protein signature 256 270 - -
Vvi3g0127 887 Gene3D Ribonuclease Inhibitor 536 857 IPR032675 -
Vvi3g0127 887 Gene3D - 410 502 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0127 Vvi-Chr3 1111137 1113800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0127 175 369 WRKY Transcription Factor Family AT5G45050 26.667 2.01e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0127 - - vvi:109121502 1741.86