Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0126 ATGGCGACAGAGGTTGTGGTTTCCTTTGCGATTAAAAGGTTCGGTGACATGCTCATTCAAGAAGCAATTTTCTTGAAGGGGGTACGGGGGAAAGTCGAGAGGCTGAAGAAAGATCTAGGGGCCATGAAATGCTTCTTGGAAGAAGCGGAGATAAAGCAAGAAGAAGATTTAAGAGTGCGCAACTGGGTTTCTGAAATCCGTGATGCGGTTTATGATGTTGAGGACATCATAGACATGTTCATCCTGAATGCAGAGTCCCTGAGAACAGACTACTTTCACAAGCGTGTCTTCAAGAAGTTGATAAACCGCCATAAGGTTGGCAAGAAAATTGAAGACATCCAACTTACCCTCCAATACATCTCAAATAGGCGGGAGGCTCTCGGAATAAAAAATATTGGAGAAGGAACAAGCGGTTCGGGTCAAATGTTGCAGGATCTAAGACGCTCCTCTCCTCGTGCAGAAGAACGTGTCATCGTGGGCCTTACACAGGAGGCAGATAAGCTAGTGAAGCAGCTCACCGTAGGAGACCAAAGGCGCCGCGTGATTTCTATGGTAGGAATGGGCGGCATAGGCAAAACCACCCTTGCCAAGAAGGTCTATAATCATGAAAAAATTGTGAAACACTTTCCAGATTGTCGTGCCTGGATTTATGTATCCCAAGATTGTAGACCCAGAGAGGCTTATATGCAAATTATTAACCAGGTTTCTGCACCAACTAAAGAGCAAGCAGAAATGATAGAGAAGTATGGAGAGAACGAGTTGGGGGATTTCCTTCATGATCATTTGAAGGAGAAAAGATATTTGATAGTTCTGGATGACGTATGGACCTGTGCCGATTGGGATTTTCTTGCAAAAGTGAGCAGCAACGATCCTGATTGCCCTGGAAATGTTTTTCCCGATGGGAGTAACGGCAGCAGATTACTTCTTACAACTCGATATAAGGATGTTGCTTTGCATGCAGATGCTCGAACTATTCCCCATGAAATGCGGCTTCTATCCAAACAACAGAGCTGGAACTTGTTTTTTCGGAAGGCGTTCCTTGATACTGATAGCGAGAGATATCCTCCAGATTTGAAGGAACTTGGGGAAGAGATGGTGGACAAATGTAATGGTTTGCCATTGGCCATCGTTGTATTGGGGGGTTTGCTGTCAAGAAATATGTCACATACAGAATGGAAGCAAGTGCATGATAACATTAGTGCATACCTTGCTAAAGAAGGCCAAATGGGAGTAATGGCAATGCTAAACCTGAGCTACATCGACTTGCCCCATTACTTGAAACCGTGCTTTCTTCATTTAAGCCACTTCCCAGAAGATTATTTGATCTCCTCAAGAAAACTGCTCCTTTTATGGACTGCTGAGGGTTTTGTGCCAGAACAAGATGACGGAAGAATGAAAGACATGGCTGAGGTTTACTTGAATGAGTTAAGCAATAGAAATTTGATTCAAGTAGTGAGAAGGAGTGTTAATGCAAGGGTTACGAAATGTCAGGTTCATGACCTTGTACGAGAGTTGGCCATTGAAAAGGCAAAAGAGCAAAACTTCATTGGAACTAATATCGCAGATCCTCTATCCCCCTCCACCAGTTTATCTCTCTTTTCACCTAAATCCCGCCGTCGAAGTATTTATTCTGACTTTGAGAGTTATGCTTCCATTGAACATTTAACTCCATATCTTCGTTCTCTCTTATTTTTCAATTTGGGGAAAAATTGTAGAGCATCACAACTAGATTTCATTGCCAAATGCTTCAAAGTGCTTAGAGTGTTAGATTTGGAAGGTTTAGAAATTGAATGCCTACCCAGTATAATTGGGGAACTGATTCATTTAAGGTACTTGGGATTAAGGCATACTGGTCTAAAAATGCTTCCACCATCTATAGGCAACCTGAGGAGTTTGCAGACTTTGGAGATAAACAATCTTAGACAAGTGCCAAATGTGATATGGAAGATGAAAAACATGAGATATCTTTACATGGAGGGGCAAGAGGAAGATGTTCCACTGCAAATTGATACGTTGCAAAATCTTCAAATTCTATCGGGCATAACCTTCGACCAATGGATCAAGAACGATTCAAGCAACTTAACTTGTCTTGGGAAATTGAAATTAGAAGGAAGGTGTGACGTAGAAGGAGTTGAGTTTTTAAACTCCATTGCCAAGCTACTTAGTCTTAAATCCTTGTACCTTAAGGCATCAGATGAGTCCAACATTCCACCCTTTGCCATAAACTCTTGCCTCCATCTCTCTAAGTTGGACATAAAGGGACACATGCAAAAATTCCCTGAAATCCATGAATTCTCACAAAGTCTCACACAATTGACATTGGAAGCATCCAGGCTAGATTGTGATCATATGATGATGGAGAAATTTCAAGAGAACCAGTTGGGGGATTTCCGTCATGATCATTTGAAGGGGAAAAGATATTTGATAGTTCTAGATGATGTCTGGAGCCATGCCGATTGGGATTGTCTTGCAAGAGTGAGCAGCAGCAATTCTGATTGCCTTGGAAATGTGTTCCCTGATGGGGGTAAGAGCAGCAGATTACTTCTTACAACTTGA 2556 0.4214 MATEVVVSFAIKRFGDMLIQEAIFLKGVRGKVERLKKDLGAMKCFLEEAEIKQEEDLRVRNWVSEIRDAVYDVEDIIDMFILNAESLRTDYFHKRVFKKLINRHKVGKKIEDIQLTLQYISNRREALGIKNIGEGTSGSGQMLQDLRRSSPRAEERVIVGLTQEADKLVKQLTVGDQRRRVISMVGMGGIGKTTLAKKVYNHEKIVKHFPDCRAWIYVSQDCRPREAYMQIINQVSAPTKEQAEMIEKYGENELGDFLHDHLKEKRYLIVLDDVWTCADWDFLAKVSSNDPDCPGNVFPDGSNGSRLLLTTRYKDVALHADARTIPHEMRLLSKQQSWNLFFRKAFLDTDSERYPPDLKELGEEMVDKCNGLPLAIVVLGGLLSRNMSHTEWKQVHDNISAYLAKEGQMGVMAMLNLSYIDLPHYLKPCFLHLSHFPEDYLISSRKLLLLWTAEGFVPEQDDGRMKDMAEVYLNELSNRNLIQVVRRSVNARVTKCQVHDLVRELAIEKAKEQNFIGTNIADPLSPSTSLSLFSPKSRRRSIYSDFESYASIEHLTPYLRSLLFFNLGKNCRASQLDFIAKCFKVLRVLDLEGLEIECLPSIIGELIHLRYLGLRHTGLKMLPPSIGNLRSLQTLEINNLRQVPNVIWKMKNMRYLYMEGQEEDVPLQIDTLQNLQILSGITFDQWIKNDSSNLTCLGKLKLEGRCDVEGVEFLNSIAKLLSLKSLYLKASDESNIPPFAINSCLHLSKLDIKGHMQKFPEIHEFSQSLTQLTLEASRLDCDHMMMEKFQENQLGDFRHDHLKGKRYLIVLDDVWSHADWDCLARVSSSNSDCLGNVFPDGGKSSRLLLTT* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0126 851 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vvi3g0126 851 FunFam Probable disease resistance protein At1g63360 419 508 - -
Vvi3g0126 851 Gene3D - 140 325 IPR027417 -
Vvi3g0126 851 Gene3D Ribonuclease Inhibitor 569 795 IPR032675 -
Vvi3g0126 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 851 IPR027417 -
Vvi3g0126 851 CDD RX-CC_like 4 122 IPR038005 -
Vvi3g0126 851 PANTHER DISEASE RESISTANCE PROTEIN RP 55 778 IPR044974 GO:0006952
Vvi3g0126 851 FunFam Probable disease resistance protein At5g66910 331 418 - -
Vvi3g0126 851 FunFam Probable disease resistance protein At1g61300 141 323 - -
Vvi3g0126 851 Pfam NB-ARC domain 786 828 IPR002182 GO:0043531
Vvi3g0126 851 Pfam NB-ARC domain 163 419 IPR002182 GO:0043531
Vvi3g0126 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 433 IPR027417 -
Vvi3g0126 851 PRINTS Disease resistance protein signature 369 383 - -
Vvi3g0126 851 PRINTS Disease resistance protein signature 261 275 - -
Vvi3g0126 851 PRINTS Disease resistance protein signature 627 643 - -
Vvi3g0126 851 PRINTS Disease resistance protein signature 181 196 - -
Vvi3g0126 851 Gene3D - 419 510 IPR036388 -
Vvi3g0126 851 SUPERFAMILY L domain-like 497 784 - -
Vvi3g0126 851 Gene3D - 331 418 IPR042197 -
Vvi3g0126 851 Gene3D - 6 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0126 Vvi-Chr3 1088445 1096163 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0126 180 660 WRKY Transcription Factor Family AT5G45050 22.885 5.22e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0126 - - vvi:100852727 1435.62