Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0122 ATGGCCGAGTCTGCAGTTTCCTTCGCTGTCGAAAGGATTGGTGACGCACTCCTTCAAAAAGCAATTTTCTTGAAAGGGGTGCATGAGCAAGTCGATCGGATGCAGAGAGAGCTGAAGCGGATGCAATGCTTCTTGAAAGATGCGGATGCAAAGCAGCAAGAAGATGAGAGGGTGCGCCACTGGGTTTCTGAGATCCAGGATGTTGCTTATGATGCTGAGGACGCTATAGATGCCTTTATCTTCAATGTAGAGTCTGGAAGGACAAAGTTCTTCCCCTGCCGCATGTTCAAAAAGCTGGTGAGTTCTTGTAAGGTTGGCAAGGAAATTGAAGCCATCCAAATTAAGATCCAGGACATCTCGAAGAGTCGGGAAACGTACGGAATCAATAGCATTGGAGAAGCAACTAGTCAAGCAGGTCAGAGGCTACAAAAGCTAAGATATATCTCTCCTCTTGTAAAAGAAGAGATTATTGTGGGCCTCAAGGAAGACACTGATAAGCTCGTGGAGCAGCTTGTGAAAGGGGATGAAAGACGCCGTGCCGTTTCTATAGTAGGAATGGGCGGCATAGGCAAAACTACTCTTGCCAAAAAAGTCTACAACGATAGCCAAGTCATGGGTTATTTTCGGTTTTGTCGTGCCTGGGCTTATGTATCCCAAGATTGTAGACCCAGAGACGTTTTCCAGAATATTCTAAACCAAATTCCCTATAAACCAAATGAAGATGAAGCAAAGAAGATAGAGAAAATGCAAGAGCACGAGTTCGGGGATTTCCTTCACGAGCGTCTGAAGGAGAAAAGATTTTTGGTAGTTTTGGATGACATATGGGAAAGTGACGATTGGAAATGCCTTGCAAAGGCGTTCCCAGAGGAGAACAATGGCAGCAGATTACTTCTTACAACTAGAAACAAGAATGTTGCTTTGCAAGCAGATGCTCAAAGTGTTCCCTACGAAGTGAAACTTCTCTCCGAAGAAGAGAGTTGGAAGTTGTTTTGTAGAAGTGCAATCCCTGGCAATGTTACCGAGAGTTGTCCTCCAGAGTTAAAGGAACTTGGGGAAAAGATGGTGAAGAAATGCGCTGGTTTACCATTGGCTATTGTTGTATTGGGAGGCTTGCTATCATCCAGAACGCAGTTACTGACTGTGTGGGAAGAAGTGTTCAACAAACTCCGGGCGCACTTCGCAGTAAGCAATGGAGTAGATGCAATATTGAGCTTAAGCTACATCGATCTGCCCCACAACTTGAAATCCTGCTTTCTTTATCTAGGCCTCTTTCCAGAAGATAAGGTTATCTCCAAGAGACGTTTACTCCTTCTATGGATTGCGGAGGGTTTTATTACACAACAAGATGAACAGAGACTGGAGGACACCGCTGAGGATTATTTGAATCAGTTAATCAACAGAAACTTGGTTCAAGTGGTGTCAGTGAGTGTTAATGAGAGAGTCACACGATGTCGGATTCATGATCTAGTACGGGATTTATGCATAAAAAAGGCGAAGGAGCAAAACTTTTTTGAGATTAAAAATGACATAGTTTCTCCTTCCTCAACTAGTTCATCTCTCCCTTCAACCAAATCCCGTCGACTAGGTATCTATTTAGACTTCAAGAGGTATGCTTCCAAACAAAATTCAACTTCATACGTTCGTTCTCTCCTCTTTTTTGGAGACCGACCTCTATCCTCAAATTTTATTTATAAGTATTTCAAATTGCTTAGAGTGTTGGACTTGGAAGCAGTAGGTATCATAAGCCAACCAAATTCACTTGGGAAACTAGTTCATTTAAGATACTTGACATTAAAGAGGGTTGAAAATTTCAATGACCCATACCTTTTGAGCTTCTTAGGTAAGTTAAAAGGTTTACAAACTCTGGGTGTAGAATTTTCCACAGAAGTACCAATTCTGATACAAAAAATGGAAAATCTACGATACCTTTTCCTCTCGTATTATAAAAAAGTTGGCAAACCATTACAAATTGATACCCTGAGAAATCTTCAAACTCTCTCAGGCATATATTTTAGTGATTGGCAACAAAATGACACAAGCGAGTTCACTAGCCTTCGAAAATTGAAAATAGAAGTGGATGATGTGACAGTGGCTGAGTTTTCAAACTCCATTGCTAAGCTTGCGAATCTTCGCTCCTTGTATCTTGAGGCAGTATCACCTAACTTTATTCCATGCTTTGTCATGAATTCTTGGCTTCATCTATCTAAGTTGCTGTTGAAAGGATCAATACCGATGTTACCTAAAGCAGATGAGTTCCCGCCAAGTTTAACACAATTGACGTTGGAAAATATTAGGCTAGGCCATGGCCATATGATGATTTTAGAGAAGTTGCCAAAATTGTTGATTTTCAGATTAAGAAGAATGTCCAAATACCTTGAAGAGGAAATGCAAGTATCTGCAGATGGCTTTCCTCAACTCAAAATCCTTCAACTTTCTGGCTTACGAACATCACCAAGGTTGTTGATTATAAATAAGGGTGGCATGCCAAAACTTACTCACTTGCAGATTTTTGAATGTTACTTCAACATCGATGGACTTGGTGAGCTCTTACATCTAAGGAAGGTAGATGTCAATGTTGCATATCATCGTTGGATTTCTTCCTTGCCATATCCTTCTGAATGGCATAAAATTAGAAGGTAA 2640 0.4106 MAESAVSFAVERIGDALLQKAIFLKGVHEQVDRMQRELKRMQCFLKDADAKQQEDERVRHWVSEIQDVAYDAEDAIDAFIFNVESGRTKFFPCRMFKKLVSSCKVGKEIEAIQIKIQDISKSRETYGINSIGEATSQAGQRLQKLRYISPLVKEEIIVGLKEDTDKLVEQLVKGDERRRAVSIVGMGGIGKTTLAKKVYNDSQVMGYFRFCRAWAYVSQDCRPRDVFQNILNQIPYKPNEDEAKKIEKMQEHEFGDFLHERLKEKRFLVVLDDIWESDDWKCLAKAFPEENNGSRLLLTTRNKNVALQADAQSVPYEVKLLSEEESWKLFCRSAIPGNVTESCPPELKELGEKMVKKCAGLPLAIVVLGGLLSSRTQLLTVWEEVFNKLRAHFAVSNGVDAILSLSYIDLPHNLKSCFLYLGLFPEDKVISKRRLLLLWIAEGFITQQDEQRLEDTAEDYLNQLINRNLVQVVSVSVNERVTRCRIHDLVRDLCIKKAKEQNFFEIKNDIVSPSSTSSSLPSTKSRRLGIYLDFKRYASKQNSTSYVRSLLFFGDRPLSSNFIYKYFKLLRVLDLEAVGIISQPNSLGKLVHLRYLTLKRVENFNDPYLLSFLGKLKGLQTLGVEFSTEVPILIQKMENLRYLFLSYYKKVGKPLQIDTLRNLQTLSGIYFSDWQQNDTSEFTSLRKLKIEVDDVTVAEFSNSIAKLANLRSLYLEAVSPNFIPCFVMNSWLHLSKLLLKGSIPMLPKADEFPPSLTQLTLENIRLGHGHMMILEKLPKLLIFRLRRMSKYLEEEMQVSADGFPQLKILQLSGLRTSPRLLIINKGGMPKLTHLQIFECYFNIDGLGELLHLRKVDVNVAYHRWISSLPYPSEWHKIRR* 880
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0122 879 Gene3D Ribonuclease Inhibitor 538 875 IPR032675 -
Vvi3g0122 879 CDD RX-CC_like 2 121 IPR038005 -
Vvi3g0122 879 FunFam Probable disease resistance protein At1g63360 407 496 - -
Vvi3g0122 879 SUPERFAMILY L domain-like 485 854 - -
Vvi3g0122 879 Gene3D - 143 314 IPR027417 -
Vvi3g0122 879 Gene3D - 406 498 IPR036388 -
Vvi3g0122 879 PANTHER DISEASE RESISTANCE PROTEIN RP 33 839 IPR044974 GO:0006952
Vvi3g0122 879 Gene3D - 4 113 - -
Vvi3g0122 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 421 IPR027417 -
Vvi3g0122 879 Gene3D - 320 405 IPR042197 -
Vvi3g0122 879 FunFam Probable disease resistance protein At1g61300 140 313 - -
Vvi3g0122 879 Pfam Rx N-terminal domain 5 87 IPR041118 -
Vvi3g0122 879 Coils Coil 31 51 - -
Vvi3g0122 879 PRINTS Disease resistance protein signature 358 372 - -
Vvi3g0122 879 PRINTS Disease resistance protein signature 180 195 - -
Vvi3g0122 879 PRINTS Disease resistance protein signature 261 275 - -
Vvi3g0122 879 PRINTS Disease resistance protein signature 635 651 - -
Vvi3g0122 879 Pfam NB-ARC domain 162 406 IPR002182 GO:0043531
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi3g0122 Vvi-Chr3 1066258 1068897 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0122 179 502 WRKY Transcription Factor Family AT5G45050 28.363 1.52e-11 66.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0122 - - vvi:100260633 1093.18