Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0121 ATGGCCGAGTCTGCAGTTTCCTTCGCTGTCGAAAGAATTGGCGACGCACTCCTTCAAAAAGCAATTTTCTTGAAAGGGGTGCATGAGCAAGTCGATCGGATGCAGAGAGAGCTGAAGCGGATGCAATGCTTCTTGAAAGATGCGGATGCAAAGCAGCAAGAAGATGAGAGGGTGCGCCACTGGGTTTCTGAGATCCGGGATGTTGCTTATGATGCTGAGGACGCTATAGATGCCTTTATCTTCAATGTAGAGTCTGGAAGGACAAAGTTCTTCCCCTGCCGCATGTTCAAAAAGCTGGTGAGTTCTTGTAAGGTTGGCAAGGAAATTGAAGCCATCCAAATTAAGATCCAGGACATCTCGAAGAGTCGGGAAACGTACGGAATCAATAGCATTGGAGAAGCAATTAGCCAAGCAGGTCAGAGGCTACAAAAGCTAAGATATATCTCTCCTCTTGTAAAAGAAGAGATTATTGTGGGCCTCAAGGAAGACACTGATAAGCTCGTGGAGGAGCTTGTGAAAGGGGATGAAAGACGCCGTGCCGTTTCTATGGTAGGAATGGGTGGCATAGGCAAAACTACTCTAGCCAAAAAAGTCTACAACGATAGCCGAGTCATGGATCATTTTCGGTTTTGTCGTGCCTGGGCTTATGTATCCCAAGATTGTAGACCCAGAGACGTTTTCCAGAATATCCTAAACCAAATTCCCTATAACCCAACTGGAGATGAAGCAAGGAAGATAGAGAAAATGCAAGAGCACGAGTTCGGGGATTTCCTTCACGAGCTTCTGAAGGAGCAAAGATTTTTGGTAGTTTTGGATGACGTATGGGAAAGTGACGATTGGGAACGTCTTGCAAAGGCGTTCCCAAAGGAGAGCAATGGCAGCAGATTACTTCTTACAACTAGAAAGAACGATGTTGCTTTGCAAGCAGATGCTCAAAGTGTTCCCTACGAAGTGCAACTTCTCTCAGAAGCAGAGAGTTGGAAGTTGTTTTGTAGAAGTGCAATCCCTGGCAATTTTACCGAGATTTGTCCTCCAGAGTTAAAGGAACTTGGGGAAAAGATGGTGAAGAAATGTGCTGGTTTACCATTGGCTATTGTTGTATTGGGAGGCTTGTTGTCATCCAAAAAGCAGTTGCCGACTATGTGGGAAGAAGTGTTCAACAAACTCCGGGCGCACTTCGCAGAAAGCAATGGAGTAGATGCAATATTGAGCTTAATAGCCAATCGCCTTTTTTATGCATAA 1242 0.4517 MAESAVSFAVERIGDALLQKAIFLKGVHEQVDRMQRELKRMQCFLKDADAKQQEDERVRHWVSEIRDVAYDAEDAIDAFIFNVESGRTKFFPCRMFKKLVSSCKVGKEIEAIQIKIQDISKSRETYGINSIGEAISQAGQRLQKLRYISPLVKEEIIVGLKEDTDKLVEELVKGDERRRAVSMVGMGGIGKTTLAKKVYNDSRVMDHFRFCRAWAYVSQDCRPRDVFQNILNQIPYNPTGDEARKIEKMQEHEFGDFLHELLKEQRFLVVLDDVWESDDWERLAKAFPKESNGSRLLLTTRKNDVALQADAQSVPYEVQLLSEAESWKLFCRSAIPGNFTEICPPELKELGEKMVKKCAGLPLAIVVLGGLLSSKKQLPTMWEEVFNKLRAHFAESNGVDAILSLIANRLFYA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0121 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 410 IPR027417 -
Vvi3g0121 413 CDD RX-CC_like 2 121 IPR038005 -
Vvi3g0121 413 Gene3D - 320 406 IPR042197 -
Vvi3g0121 413 FunFam Probable disease resistance protein At5g66910 320 411 - -
Vvi3g0121 413 Coils Coil 31 51 - -
Vvi3g0121 413 Pfam NB-ARC domain 162 397 IPR002182 GO:0043531
Vvi3g0121 413 Gene3D - 4 120 - -
Vvi3g0121 413 FunFam Probable disease resistance protein At1g61300 140 313 - -
Vvi3g0121 413 Pfam Rx N-terminal domain 5 87 IPR041118 -
Vvi3g0121 413 PANTHER DISEASE RESISTANCE PROTEIN RP 32 394 IPR044974 GO:0006952
Vvi3g0121 413 Gene3D - 142 318 IPR027417 -
Vvi3g0121 413 PRINTS Disease resistance protein signature 180 195 - -
Vvi3g0121 413 PRINTS Disease resistance protein signature 358 372 - -
Vvi3g0121 413 PRINTS Disease resistance protein signature 261 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0121 Vvi-Chr3 1062491 1063732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0121 179 390 WRKY Transcription Factor Family AT5G45050 30.047 5.05e-10 59.7