Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0120 ATGGAGATGGAAAAGCAAGTATCTGCAAATGGCTTTTCTCAACTAAAAATTCTCTATCCTTCTAACTTAACAGTATGGAAGAGGATGAATATACAGAAAGGTGGCATGTCAAAGCTTAATTGCAGATTTTTGCAAGTTTCGTGGAAATCGTTAAGCTTAATGAGCTCTCACATCTACAAAAGGGCTGTAATCTCCTTTGTCGTAAACAGGATTGGTGACCAACTCATTGAAGAAGCAGTTTTCTTGAAGGATGTGCGCCCACGAATTGAGAGGCTGCATAGAGATCTGAGGGCGATCAACTGCTTCTTGGAAGCAGCCGATGCAAAGCAAGAGGAAGACCCAAGGGTGCGTAACTGGGTTTCAGACATCCGAGATGTTGCTTATGATGCTGAAGACGTGGTCGACATGTTCATCCTCAAGGCTGAGGCCCTGAGGAGAAAAATCTTTGTCAAGCGCGTTTTCCAAAAGCCGAGGTGTCTGCATAACCTTGGCAAGAAAATCGATGACGTCCAAACTAACCTCCAAGACATCTCAAAGAGGCGGGAAATCCTGGGAATAAAAAATATTGGTGAAGGAACAAGCACTTCAACTCAGATGCTGCAGAATCTAAGACGGACCACTCCTCGTGCAGAAAAACATGTCATTGTAGGCCTGAATGAAGAAGCCAAAGAGCTTGTGAAGCAGCTGACCAAAGGAGACCCAAGGCGCCGTGTGATTTCTATTGTAGGAATGGGCGGCATCGGCAAAACTACTCTTGCCAAGAAAATCTATAATCATAGCAGAGTTGTGGATCATTTTCAGTCTTGTCGTGCGTTGGTTTATGTATCCCAAGATTGTAGACCCAGAGACATCTTTCAACAAATTCTAAACCAATTTCCTTATACACCAACGGGAGATGAAGCAAGGAAGATAGAGAAATTGCAGGAGAACGAGTTGGGGGATTTCCTTCATAAACGCCTGAAGGAGAAAAGGTTTTTGGTAGTTTTGGATGACATATGGGGAAGTGATGATTGGAAATGTCTTGCTAATGCATTCCCAGAGGAGAGTGATGGCAGTAGATTACTTCTTACAACTAGAAATAAGGATGTTTCTTTGCTAGCAGATGCTCAAAGCGTTCCCTACGAAGTGAAACTCCTCTCGGACACGGAAAGTTGGACGTTGTTTTGTAGAAGTGCAATCCCTGACAATGTTACTGAGAGTTGTCCTCCAGAGTTGAAGGAATTCGGGGAAAGGATGGTGAAAAAATGTGCTGGTTTACCATTGGCCATTGTTGTATTGGGAGGCTTGTTATCATCCAAAAAGCAATTGCCTACTGAGTGGGAAAAGGTGCTCAAGAACCTACAGGCGCACTTCTCCAGTGACAAAGGAGTAGATGCAGTATTGAGTTTAAGCTACATTGACTTGCCCCACAACTTGAGATCATGCTTTCTTTATCTAGGCCTCTTCCCAGAAGATCAGATAATCCCCACAAGAAAATTGCTCCTCCTATGGATGGCAGAGGGTTTTATCCCACAGAAAGATGAACGAAGAATGGAGGACACCGCTGAGGATTATTTGAATGAGTTAATCAGTAGAAACTTGGTTCAAGTAGTAACAGTGAGTGTTAATGAGAGAGCAACAAAATGCCAAATTCATGATCTAGTACGGGATTTATGCATCAAAAGGGCGAAAGAGCAGACCCTTTTTGAGATAAAAAAGAGCGTGAGTTCATCTTTTCCTTCAACCAAATCCCATCGACAGGGTATTTATTTTGACTTGGAGAGGTATGCTTCCACAAAACATTCAACTCCATACATTTGCTCTCTCTTCTTCTTCACATTAAAAGGTCATTGGTGCCGTCTACAACAATTAGATTTTATTTGCAAATATTTCAAACTGCTTAGGGTGCTAGACTTGGAAGGTTTATTCGTTGAAATACCGAGAGCATTTGGGAAACTGATTCATTTGAGGTATTTGAGAAACATGGAAAATCTTCAACACCTTTTCATCTCGTATGAAAGACAAGATGGCAAGCCATTACGAATTGACAATCTAAGAAATCTCCAAACTCTATCCGGCATATGGTTTAGTGATTGGCAACAAAATGATACGAGTAAGTTACCTAACCTTCATAAATTGAAAATCAACGTGGGATTTGACTTGGAAGTGTCCCAGTTCTCAAACTCTATTGCCAAGCATGTGAATCTTCGCTCATTGTATCTTAATCAATATGAACGTGATGATCGTGACATATCAGATCTATTAGATCCCTTCCCGCAGCTTGAGACATCATCATATACCTTCAGTCTTTATCACTCATTATCAAGTCACTACAGTTTTTTGGATTCAGATCCCCGTAGCATTCCATCTTTTGTCATGAACTCTTGGCTCCATCTATCTAAGCTGCACATGAAGGGAAACATAAAGCAATTGCCTAGAGCACATGAATTCTCACCAAATCTAACACAGTTGACCTTAGATAGGATTATACTGGACTATGACCCTATGGCGATTTTGGAGAAGCTGCCAAAATTGTTGATTTTAAGATTGAGGATGATCTCAAAACTCAGACAAGGAGTACTGCAAGTATCTGCAAATGGCTTTCCTCAACTCAAAATCCTTCAACTTGCTAAGTTAAAGGTATTTGGGGAGAAGATGGTGAAGAAATGTGCTGGTTTGCCATTGGCCATTGTTGTATTGGGAGGCTTGTTATCATCCAAAAAGCAGTTGCCGACTGTGTGGGAACAGGTGCTCAACAAGCTCCAGGTGCCCTTCTCTGAAGGCAATGGTGTAGATGCAATATTGAGCTTAAGTTTCATCGATTTGCCCCACAACTTGAAATCATGCTTTCTTTATCTAGGCCTCTTTCCAGAAGATTGGGTCATCCCCAAGAGAGAATTACTCCTTTTATGGATTACAGAGGGTTTTATTCCACAACAAGATGAACAAAGAATGGAGGACACTGCTGAGGATTATTTGAATGAGTTAATCAATAGAAATTTGATTCAAGTAGTAGCAGTGAGTATTAATGAGAGAAGTAAAAAATGTCGGGTTCATGATCTAGTAAGGGATTTATGCATAAAGAAGGCAAAAAAGCAAAAGCTGTTTGAGATTCAAAATAACATAGTTCATGTTCCCTCATCTTGTTCATCTCACCCTTCAACCAAATGTCGTCGACAAGGTATCCATTTTGGCTCGGGGGGTATTAATTCGTTCTTTTCAAAGCTTCCAACCTCTTTAGGTAATTTAAGGAGGTGGCAAACTTTGGATATTGGTATTGTTATATTGGAAAAGCCAACTGTGATACAAAAAATGAAAAATCTACGACATCTCTTCCTCTTCTATCATAGTCAAGATGGCAAGCCATTGCTAATTGACACTTCTCCAAACTCTGTCTAA 3378 0.4085 MEMEKQVSANGFSQLKILYPSNLTVWKRMNIQKGGMSKLNCRFLQVSWKSLSLMSSHIYKRAVISFVVNRIGDQLIEEAVFLKDVRPRIERLHRDLRAINCFLEAADAKQEEDPRVRNWVSDIRDVAYDAEDVVDMFILKAEALRRKIFVKRVFQKPRCLHNLGKKIDDVQTNLQDISKRREILGIKNIGEGTSTSTQMLQNLRRTTPRAEKHVIVGLNEEAKELVKQLTKGDPRRRVISIVGMGGIGKTTLAKKIYNHSRVVDHFQSCRALVYVSQDCRPRDIFQQILNQFPYTPTGDEARKIEKLQENELGDFLHKRLKEKRFLVVLDDIWGSDDWKCLANAFPEESDGSRLLLTTRNKDVSLLADAQSVPYEVKLLSDTESWTLFCRSAIPDNVTESCPPELKEFGERMVKKCAGLPLAIVVLGGLLSSKKQLPTEWEKVLKNLQAHFSSDKGVDAVLSLSYIDLPHNLRSCFLYLGLFPEDQIIPTRKLLLLWMAEGFIPQKDERRMEDTAEDYLNELISRNLVQVVTVSVNERATKCQIHDLVRDLCIKRAKEQTLFEIKKSVSSSFPSTKSHRQGIYFDLERYASTKHSTPYICSLFFFTLKGHWCRLQQLDFICKYFKLLRVLDLEGLFVEIPRAFGKLIHLRYLRNMENLQHLFISYERQDGKPLRIDNLRNLQTLSGIWFSDWQQNDTSKLPNLHKLKINVGFDLEVSQFSNSIAKHVNLRSLYLNQYERDDRDISDLLDPFPQLETSSYTFSLYHSLSSHYSFLDSDPRSIPSFVMNSWLHLSKLHMKGNIKQLPRAHEFSPNLTQLTLDRIILDYDPMAILEKLPKLLILRLRMISKLRQGVLQVSANGFPQLKILQLAKLKVFGEKMVKKCAGLPLAIVVLGGLLSSKKQLPTVWEQVLNKLQVPFSEGNGVDAILSLSFIDLPHNLKSCFLYLGLFPEDWVIPKRELLLLWITEGFIPQQDEQRMEDTAEDYLNELINRNLIQVVAVSINERSKKCRVHDLVRDLCIKKAKKQKLFEIQNNIVHVPSSCSSHPSTKCRRQGIHFGSGGINSFFSKLPTSLGNLRRWQTLDIGIVILEKPTVIQKMKNLRHLFLFYHSQDGKPLLIDTSPNSV* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0120 1125 PRINTS Disease resistance protein signature 833 849 - -
Vvi3g0120 1125 PRINTS Disease resistance protein signature 238 253 - -
Vvi3g0120 1125 PRINTS Disease resistance protein signature 416 430 - -
Vvi3g0120 1125 PRINTS Disease resistance protein signature 319 333 - -
Vvi3g0120 1125 FunFam Probable disease resistance protein At1g61300 197 370 - -
Vvi3g0120 1125 Pfam Rx N-terminal domain 63 145 IPR041118 -
Vvi3g0120 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 946 IPR027417 -
Vvi3g0120 1125 Gene3D - 193 371 IPR027417 -
Vvi3g0120 1125 Pfam NB-ARC domain 222 452 IPR002182 GO:0043531
Vvi3g0120 1125 Pfam NB-ARC domain 871 915 IPR002182 GO:0043531
Vvi3g0120 1125 PANTHER DISEASE RESISTANCE PROTEIN RP 103 869 IPR044974 GO:0006952
Vvi3g0120 1125 Gene3D - 378 463 IPR042197 -
Vvi3g0120 1125 Gene3D - 859 930 IPR042197 -
Vvi3g0120 1125 CDD RX-CC_like 62 179 IPR038005 -
Vvi3g0120 1125 Gene3D - 464 556 IPR036388 -
Vvi3g0120 1125 Gene3D - 931 1023 IPR036388 -
Vvi3g0120 1125 Gene3D - 63 183 - -
Vvi3g0120 1125 Gene3D Ribonuclease Inhibitor 606 758 IPR032675 -
Vvi3g0120 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 479 IPR027417 -
Vvi3g0120 1125 Coils Coil 160 180 - -
Vvi3g0120 1125 FunFam Probable disease resistance protein At1g63360 465 554 - -
Vvi3g0120 1125 SUPERFAMILY L domain-like 545 878 - -
Vvi3g0120 1125 FunFam Probable disease resistance protein At1g63360 932 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0120 Vvi-Chr3 1050448 1058022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0120 216 560 WRKY Transcription Factor Family AT5G45050 26.705 2.12e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0120 - - vri:117911194 1389.79