Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0109 ATGGGTTCACACAATGGGGTTGTGGGTGATGAAGAAAACCCTCATAATGGAATCAGAATTCAACCTGTTCTTTCTACTCCAATGGCTGAGCAGTGGAAAAGTGAGGAAGGGAAGAAGATGAACACTACAATGGGTGAGAGATTGGGTTTGAATGAGCTGTTTTCTCCCCAGGTCTGGAGAGCATCGTTGGCAGAGCTGCTTGGGACGGCGCTGCTGGTTTTTCTCTTAGACACTATAGTTATCTCATCAATCCAGACTCAAACCAAGACACCAAACCTTATCATGTCGGTTGTTGTTGCCATCACAATCGCTATTCTCCTGCTGGCCACCATCCCGGTTTCTGGCGGCCATATCAACCCTGTGATCACCTTCTCTGCTGCTCTGCTGGGACTTATCTCTTTCTCACGCGCTGCTGTGTACTTTTTGGCTCAATGTCTAGGTGGTGTGCTGGGTGCACTGGCACTGAAAGCAGTGGTGAATAATACAATTGAGGAAACATTCTCCCTTGGAGGGTGCACTCTCAGTATTGTTGAGCCAGGCCCAAAAGGGCCCATAACAATAGGCCTCGAGACGGGGCAGGGCCTTTGGATGGAGGTGATCTGCACCTTCATCTTCCTCTTCGCCTCAGTTTGGATTGCATTTGATGAACGCCAAGCCAAGGTTCATGGGGCGGTTGTTGTTTGCTCGATCATTGGGACGGTGCTGGGCCTGCTGGTGTTTGTGTCGACAACGGTGACAGCAACAAAGGGCTATGCAGGCGCTGGGATGAACCCCGCCCGGTGCTTGGGCCCAGCCTTGATCAGAGGAGGCCACCTCTGGGATGGGCATTGGGTGTTCTGGGCTGGTCCTGCTATCGCCTGCATGGCATTCTATCTGTACATTAAGATAATTCCAGATCACCATTTCAAGGGCAAAGAGCACAAGCATGATTTATTGAATATATTGAGGCATTCATTGAAGTAG 963 0.5016 MGSHNGVVGDEENPHNGIRIQPVLSTPMAEQWKSEEGKKMNTTMGERLGLNELFSPQVWRASLAELLGTALLVFLLDTIVISSIQTQTKTPNLIMSVVVAITIAILLLATIPVSGGHINPVITFSAALLGLISFSRAAVYFLAQCLGGVLGALALKAVVNNTIEETFSLGGCTLSIVEPGPKGPITIGLETGQGLWMEVICTFIFLFASVWIAFDERQAKVHGAVVVCSIIGTVLGLLVFVSTTVTATKGYAGAGMNPARCLGPALIRGGHLWDGHWVFWAGPAIACMAFYLYIKIIPDHHFKGKEHKHDLLNILRHSLK* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0109 320 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0109 320 PRINTS Major intrinsic protein family signature 238 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0109 320 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0109 320 PRINTS Major intrinsic protein family signature 277 297 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0109 320 PRINTS Major intrinsic protein family signature 99 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0109 320 PRINTS Major intrinsic protein family signature 60 79 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0109 320 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g0109 320 PANTHER AQUAPORIN-LIKE 5 318 - -
Vvi3g0109 320 Gene3D Glycerol uptake facilitator protein. 25 310 IPR023271 -
Vvi3g0109 320 Pfam Major intrinsic protein 55 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0109 320 SUPERFAMILY Aquaporin-like 58 297 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0109 Vvi-Chr3 984267 985423 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0109 9 306 Major Intrinsic Protein MIP AT3G61430 30.619 3.64e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0109 - K09866 vvi:100241797 621.313