Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0107 ATGGATCCCGTTGTCATGAATATTGTTGGCCAGGATTCCCCCAGAAAGGTGGAGGAAAGCAAGGCAACTTCTTTAGAAGGAAAGGACTCTTCAAGGACAGCATTTCTCCCCTGCATTATTTCCCATGAATTCTTCTCACCAGAGGTCTGGAGAGCATCCGTTGCAGAGCTTCTTGGGACAGCAGTGCTTGTGTTTGTGCTTGACACCATAGTTATCTCCTCCTACCAAACCAAAACTGAAACACCAAACCTTGTGATATCATTCTTCATTTTCCCCACACTCACAATTCTTCTCCTTGCCACCTTTCCCATTTCTGGTGGTCACATCAACCCTATAATCACCTTCTCTGCTGCACTAGTTGGTGTGATCTCTCATTCACGGGCATGCGTCTATGTCTTGGCTCAATGTGCAGGCGCTGTGCTAGGTGCACTGGCACTCAAAGCTGTGGTAAATAGCAACATTGAAGAAACATTCTCCCTTGGAGGCTGCACCCTCAGTGTCATTGTTCCAGGCCCTGATGGGGCTATCACTGTAGGTATCAACACAGGGCAGGCTTTATGGCTTGAGATAATATGCACATTTGTGTTATTGTTTGCTTCAGTATGGATTGGATTTGATGATCGCCAAGCGAAGGCGCTGGGGCTGGTTCTGGTTTGCTCGATCATTGGAGCTGTGGCTGGGGTTCTGGTATTTGTGTCGACAACAGTTACAGCAACCAAAGGTTATGCTGGTGCTGGGATGAACCCTGCTAGATGTTTGGGGGCAGCACTGGTTAGAGGGGGTCAACTCTGGAATGGCCTCTGGGTTTTCTGGGTTGGTCCTGCTATTGCTTGCTTGCTATTCCATGTGTATGTGAAGACCATTCGAGATCTGCCACCATGGACAGAGTTCCTAAGTAAGAATGAACTGCCATGA 915 0.4798 MDPVVMNIVGQDSPRKVEESKATSLEGKDSSRTAFLPCIISHEFFSPEVWRASVAELLGTAVLVFVLDTIVISSYQTKTETPNLVISFFIFPTLTILLLATFPISGGHINPIITFSAALVGVISHSRACVYVLAQCAGAVLGALALKAVVNSNIEETFSLGGCTLSVIVPGPDGAITVGINTGQALWLEIICTFVLLFASVWIGFDDRQAKALGLVLVCSIIGAVAGVLVFVSTTVTATKGYAGAGMNPARCLGAALVRGGQLWNGLWVFWVGPAIACLLFHVYVKTIRDLPPWTEFLSKNELP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0107 304 Gene3D Glycerol uptake facilitator protein. 12 293 IPR023271 -
Vvi3g0107 304 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0107 304 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0107 304 PRINTS Major intrinsic protein family signature 229 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0107 304 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0107 304 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0107 304 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0107 304 PANTHER AQUAPORIN-LIKE 14 288 - -
Vvi3g0107 304 Pfam Major intrinsic protein 46 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g0107 304 MobiDBLite consensus disorder prediction 1 25 - -
Vvi3g0107 304 SUPERFAMILY Aquaporin-like 42 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0107 Vvi-Chr3 976131 977121 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0107 15 285 Major Intrinsic Protein MIP AT4G35100 31.429 4.14e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0107 - K09866 vvi:104878514 577.4