Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0103 ATGAAGGTCCAGATGCTGTCTACCAAGCTGATAAAACCATCATCTCCCACGCCATCTCACCTCCGGACCTTGAAACTATCCCCTATTGACCAACTATTTACATATACGGCCAAGCCGTCTGCTATTTACTACTACTCTGCCGAGAGCAGCAGCAGCAGCAGAAGTGAAGATGTTGAAAGACGAAACCGCTTGGAGACATCACTGTCAGAGACCCTGACTCTTTTCTACCCGCTAGCAGGAAGATACATCAAAGATAGTCACTCGGTTGATTGTAACGACGAAGGGGCTGAGTATTTGGAGGCCAAAGTAGAGGGCCAACTCAGTCAACTTCTAAGCAGGAGAGATGAGATGATCTACCAACTGGTTCATTTATCAGGCGGACAATCAACAAGTCCCGTAGCATCGATTCAGATCACCAGGTTTGATTGCGGAGGACTAGTCATTGGAGTTCGCATTCATCACATCGTTGTTGATGGATTCACTGCGGCTAGCTTTGTCACCGCTTGGGCTACTGCAAGCAGAGAAGGCGTAGGTAAATTAATTTTTCCGACTTTCGGCTTGACTTCTTTCTTCCCGGAGAATGATTTACCTATGCTGAAGCCAAGGCCTCCCCCGAAAATCTCTGAAACGAATAAGGTCGTGACCAGGAGGTTTGTGTTTGATGGGGCCAAAATATCGTCCCTCAAGGCCAGAGCTCATGACCCCAGCTTCCAACGGGAGCCTTCACGGGTGGCGGTGGTGACAGCCCTGATATGGAGAGCTCTCATGGGTGTAAGCAAGGCAAAACATGGACGCTTGAGGACTTCTCTAGCCTCCCACAGCATAAACTTGCGCCCAAAAATCGTCCCACCATTACCGCCCTTGTGCTGTGGAAACCTCACTACAAGGTATAAAGCCAGATTCACGGCGGACGATAGCAACGGGGAGTTGCCTGATTTGAAGGAGTTGGTGGGTTTACTAAGAGATGCCACAAAATCCAATGCAGCAATGCCTCGCGAGGATATGTACTCGACGGTGATAAAATCCAGGAATGAGTTACACGAAGATATGGAGGACGAAGAAGTAGATGTGTTTCTGTTCAGTAGCTGGAGTAGGCTGTCTTTCCACGAAGCCGATTTTGGTTGGGGGAAGCCAGTTTGGGTGAGTAAAATTCATTTTCCTGCTGACCAAATTTTTCTGTTGGACGGTGAAGGTGGTGATGGAATTGACGCATGGGTGGGCTTGAACAAACAAGACATGCTTCAGCTCCAGCAAGATGGCGACATTTTGGCCTTCACTTCCTCTGTCTAG 1290 0.486 MKVQMLSTKLIKPSSPTPSHLRTLKLSPIDQLFTYTAKPSAIYYYSAESSSSSRSEDVERRNRLETSLSETLTLFYPLAGRYIKDSHSVDCNDEGAEYLEAKVEGQLSQLLSRRDEMIYQLVHLSGGQSTSPVASIQITRFDCGGLVIGVRIHHIVVDGFTAASFVTAWATASREGVGKLIFPTFGLTSFFPENDLPMLKPRPPPKISETNKVVTRRFVFDGAKISSLKARAHDPSFQREPSRVAVVTALIWRALMGVSKAKHGRLRTSLASHSINLRPKIVPPLPPLCCGNLTTRYKARFTADDSNGELPDLKELVGLLRDATKSNAAMPREDMYSTVIKSRNELHEDMEDEEVDVFLFSSWSRLSFHEADFGWGKPVWVSKIHFPADQIFLLDGEGGDGIDAWVGLNKQDMLQLQQDGDILAFTSSV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0103 429 PANTHER F21J9.9 4 427 - -
Vvi3g0103 429 Gene3D - 1 198 IPR023213 -
Vvi3g0103 429 Pfam Transferase family 1 420 - -
Vvi3g0103 429 Gene3D - 210 424 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0103 Vvi-Chr3 955152 956441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0103 1 401 Monolignol Biosynthesis Gene Families AT5G48930 24.654 1.39e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0103 - K13065 vvi:104878534 822.387