Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0095 ATGGGTTTTCGCTTGCCTGGGATTGTTAATGCTAAGCAAATCCTGCAGCAAGTGCGCAAGGGTGCAGAGGCCAAAAATGTACCAAAAGGCTATTTTTCTGTTTATGTGGGAGAAGTCCAGAAGAAGCGATTTGTGGTTCCACTCTCATACTTGAAGAACCCTTCATTCCAGAACTTGTTGAGCCAGGCTGAAGAAGAGTTCGGGTTTGATCATCCAATGGGTGGTCTCACAATCCCCTGCACAGAAGAAGCCTTTATTGATCTTACTAGTAGTTGGAACTGCTCATGA 288 0.4514 MGFRLPGIVNAKQILQQVRKGAEAKNVPKGYFSVYVGEVQKKRFVVPLSYLKNPSFQNLLSQAEEEFGFDHPMGGLTIPCTEEAFIDLTSSWNCS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0095 95 Pfam Auxin responsive protein 21 89 IPR003676 GO:0009733
Vvi3g0095 95 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 91 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0095 Vvi-Chr3 905892 906179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0095 26 85 Calmodulin-binding Proteins AT3G43120 53.333 2.50e-16 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0095 K14488 - vvi:100243412 197.208