Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0090 ATGGCCATCCGTTTTCAGAGGATTATTCCTGCCAAGCAGATCCTGAGACGCATTCTTCCATCTTTGGAGTCCACAAATGTGCCAAAAGGCCATGTTCCTGTCTATGTTGGAGAAACTCAGAAGAAGAGATTTGTGATTCCAATTTCATACTTGAAGCATCCTTCATTCCAAAACTTGCTAAGTCAGGCTGAGGAAGAGTTCGGGTTTGATCATCCACTGGGTGGCCTCACTATCCCATGCAGAGAAGAAGCCTTCATTGATCTAACTTACAGTTTGAACTGCTCATGA 288 0.441 MAIRFQRIIPAKQILRRILPSLESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLLSQAEEEFGFDHPLGGLTIPCREEAFIDLTYSLNCS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0090 95 Pfam Auxin responsive protein 22 89 IPR003676 GO:0009733
Vvi3g0090 95 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 19 91 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0090 Vvi-Chr3 892027 892314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0090 26 94 Calmodulin-binding Proteins AT3G43120 52.174 7.51e-17 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0090 K14488 - vvi:100241903 195.282