Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0088 ATGGCCATCCATTTTCAGAGGATTATTCCTGCCAAACAGATCCTAAGACACATTTTTCCATCTCCAGAGCCCACAAATGTGCCTAAAGGCCATGTTCCTGTCTGTGTTGGAGAAACTCAGAAGAAGAGATTTGTGATTCCAATTTCATACCTGAAGCATCCTTCATTCCAAAACTTGCTAAGTCAGGCTGAGGAAGAGTTCGGGTTTGATCATCCACTGGGGGATCTCACAATCCCATGCAGAGAAGAAGCCTTCCTCAATCTAACTTGCAGCTTGAATTGCTCATGA 288 0.441 MAIHFQRIIPAKQILRHIFPSPEPTNVPKGHVPVCVGETQKKRFVIPISYLKHPSFQNLLSQAEEEFGFDHPLGDLTIPCREEAFLNLTCSLNCS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0088 95 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 19 92 IPR003676 GO:0009733
Vvi3g0088 95 Pfam Auxin responsive protein 21 92 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0088 Vvi-Chr3 885397 885684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0088 21 88 Calmodulin-binding Proteins AT3G43120 53.623 1.37e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0088 K14488 - vvi:100264191 182.185