Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0087 ATGGGTTTTCATTTGCCTGGAATTGTTAATGCTAAGCAGATCCTGCAGCGGGCACATGTGGGTGCTGAGTCCAAGAATGTGCCTAAAGGCTATTTTTCTGTTTATGTGGGAGAAATCCAAAAGAAGAGATTTGTGGTTCCAATCTCATACTTGAAGAATCCTGCATTCCAGACCCTGTTGAGTCAGGCTGAAGAAGAGTTCGGGTTTGATCATCCAATGGGTGGTCTCACAATCCCATGCACAGAAGAAGCCTTTATTAATCTCAGTTGTTATTTGAACAGCCCATGA 288 0.434 MGFHLPGIVNAKQILQRAHVGAESKNVPKGYFSVYVGEIQKKRFVVPISYLKNPAFQTLLSQAEEEFGFDHPMGGLTIPCTEEAFINLSCYLNSP* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0087 95 Pfam Auxin responsive protein 21 91 IPR003676 GO:0009733
Vvi3g0087 95 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0087 Vvi-Chr3 883689 883976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0087 26 95 Calmodulin-binding Proteins AT3G43120 50.704 3.40e-17 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0087 K14488 - vvi:100252164 197.978