Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0068 ATGGCCATCAGAAAATCAAACAAACTGCCTCAAACTGCAGTTCTTAAGCAAATCCTCAAGAGATGCTCCAGCCTAGGAAAGAAAAATGGCTACGATGAAGATGGCCTTCCTCTCGACGTCCCAAAGGGTCACTTTGCCGTTTATGTTGGAGAAAACAGAAGTAGATACATTGTCCCAATCTCATTCTTGTCTCATCCAGAGTTCCAATGCCTGCTTCAACGCGCTGAAGAAGAGTTCGGCTTCGATCATGACATGGGCCTCACAATTCCATGCGAAGAAGTTGTTTTCCGCTCTCTAACATCGATGCTCAGATGA 315 0.454 MAIRKSNKLPQTAVLKQILKRCSSLGKKNGYDEDGLPLDVPKGHFAVYVGENRSRYIVPISFLSHPEFQCLLQRAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0068 104 Pfam Auxin responsive protein 32 103 IPR003676 GO:0009733
Vvi3g0068 104 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 21 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0068 Vvi-Chr3 750025 750339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0068 37 99 Calmodulin-binding Proteins AT3G43120 58.730 5.90e-22 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0068 K14488 - vvi:100257133 214.157