Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0061 ATGGACGGGTCGTCGGTAGCGCTCGTCGAAGAAGCGAAGGCTACAGAGAGAGCGGAGAAAACACCAGGAGAACTTGTCGCCAAGGCCATCGTTCCTGTGAAGAGAGAGTTCCTTCGTCCTCCGCCTCTCAGGCCTTGTAACGACGTTGCTTCGGACTCCAAGTACACTCCTTCAACCTTCGTTAAGGAGAAGAAATCCAAACGCCAGCTCAAACGAGAACGCCGCCAGGAGCAAAAATCAGCCCTAAATATCTGTTCCGAGATTGCTAAGACAGGCAATGTTAATGCATGTCCTTATAATGAAAAGTGCCGCTTCAGCCATGACTTGGAAGCCTACAAGGCTCAGAAACCAGATGATTTAGAGGGAAGCTGTCCCTTCACAAGTGCTGAAGGAGCATGCCCTTATGGTTTGGCTTGTAGATTTTCTGGTACCCATAAAGATGGTGTTGCTGCTGGAAATTTGAATCTTCATAAGAAAAACTCTGAAATTAATGGACTGAACAAAGATGTTCAGAAGCTTTTGTGGAAAAACAAGATAAGGTTCCCCAAGGCAGATGCTAAACTCAAACTTCTTGGTCTTCTGGGGAAGGCCAATTCAAAAATTAAAACATTCGAAGATAAAGGGGAAGGTGATCTGAAAGTTTCAAATGGTACTCATGCTACTAATGATAATAGTTGTGGTGAATTGGTCATTGACTCAGATAATAAAGTAGAGGGCTCTCCAAAAATGCCAGAAGAGGATGATGTTGAGGGATTTGCAACTGATGAACCTAGACCCACGAAGAAAATAAAATCTGCAACTAATGAGGAGTGTTGCACTGGAAATGCAGATAATGGTGCATCTGTCCAGGAGAAAGATTTAGGGAAAAGCTGTGCCCAAATTGAACCAGAGTCAGCAACTGATAATATTTTTTCTGAAAGTGATGGTAGTCTAAAATTGCACCCACGTGAGAAGAAGCTTATTGATTTTAGAGAAAAGTTGTATCTTGCACCTCTAACCACTGTTGGGAATCTTCCTTTCCGAAGGGTTTGCAAGATGTTGGGAGCGGATGTAACATGTGGGGAAATGGCAATGTGCACAAATCTCTTGCAGGGTCAAGCTTCAGAATGGGCACTGCTGAGGCGACATTCAGCAGAGGATTTGTTTGGCGTACAGATATGTGGGGCATATCCTGATACTGTGGCACGTACTGTTGAACTCATAGACCAGGAGTGTGAAGTGGACTTCATTGATATAAACATGGGCTGCCCAATAGATATTGTCGTTAACAAGGGTGCTGGGTCAGCTCTTCTTACAAAGCCAATGCGAATGAAAAACATTATAGAAGCAGCTTCTGGCATAGTGGACAAACCTATAACTGTCAAGGTGCGAACAGGTTTTTTAGAAGGGCGAAATCGAGTTGATTCATTAATTGCAGATATTGGCCAATGGGGAGCCAATGTGGTAACCATACATGGTCGTTCACGTCAGCAACGCTATAGCAAGCTTGCTGATTGGGAGTACATATATCAGTGTGCGAGAAAAGCCCCTGAAGCTCTGCAAGTCCTGGGAAATGGGGACATCTTTTCATATTTAGACTGGAACAAGCACAAGTCAGGCTGTCCTGAGCTTTCTACATGCATGATTGCTCGAGGGGCTTTAGTTAAGCCTTGGATATTTACCGAAATCAAGGAACAGAGACACTGGGATATCAGTTCTGGGGAAAGGTTAAATATTTTGAAGGATTATGTTCGGTGTGGCCTTGAACATTGGGGTTCTGACACAAAAGGAGTTGAGACGACGAGGCATTTCATGCTGGAATGGCTTAGCTACACATACAGATACGTCCCTGTTGGTCTGTTAGATGTTATCCCACAACAGCTGAACTGGCGGCCACCCTCCTACTTTGGCCGCGATGACCTTGAGACTCTAATGGCCTCTGATTCTGCAGCTGACTGGATTCGAATCTCTGAGATGTTGCTTGGCAAGGTTCCTCCAGGCTTCACATTTGCACCAAAGCACAAATCCAATGCTTATGACAGAGCAGAAAACGGTTAA 2037 0.4462 MDGSSVALVEEAKATERAEKTPGELVAKAIVPVKREFLRPPPLRPCNDVASDSKYTPSTFVKEKKSKRQLKRERRQEQKSALNICSEIAKTGNVNACPYNEKCRFSHDLEAYKAQKPDDLEGSCPFTSAEGACPYGLACRFSGTHKDGVAAGNLNLHKKNSEINGLNKDVQKLLWKNKIRFPKADAKLKLLGLLGKANSKIKTFEDKGEGDLKVSNGTHATNDNSCGELVIDSDNKVEGSPKMPEEDDVEGFATDEPRPTKKIKSATNEECCTGNADNGASVQEKDLGKSCAQIEPESATDNIFSESDGSLKLHPREKKLIDFREKLYLAPLTTVGNLPFRRVCKMLGADVTCGEMAMCTNLLQGQASEWALLRRHSAEDLFGVQICGAYPDTVARTVELIDQECEVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIIEAASGIVDKPITVKVRTGFLEGRNRVDSLIADIGQWGANVVTIHGRSRQQRYSKLADWEYIYQCARKAPEALQVLGNGDIFSYLDWNKHKSGCPELSTCMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDYVRCGLEHWGSDTKGVETTRHFMLEWLSYTYRYVPVGLLDVIPQQLNWRPPSYFGRDDLETLMASDSAADWIRISEMLLGKVPPGFTFAPKHKSNAYDRAENG* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0061 678 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g0061 678 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 75 155 - -
Vvi3g0061 678 CDD DUS_like_FMN 326 561 IPR035587 -
Vvi3g0061 678 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 322 564 - -
Vvi3g0061 678 SUPERFAMILY FMN-linked oxidoreductases 326 639 - -
Vvi3g0061 678 MobiDBLite consensus disorder prediction 238 265 - -
Vvi3g0061 678 ProSitePatterns Uncharacterized protein family UPF0034 signature. 410 428 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vvi3g0061 678 ProSiteProfiles Zinc finger C3H1-type profile. 79 110 IPR000571 GO:0046872
Vvi3g0061 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 672 - -
Vvi3g0061 678 SMART c3hfinal6 120 145 IPR000571 GO:0046872
Vvi3g0061 678 SMART c3hfinal6 79 109 IPR000571 GO:0046872
Vvi3g0061 678 Gene3D - 74 151 - -
Vvi3g0061 678 Gene3D Aldolase class I 322 564 IPR013785 -
Vvi3g0061 678 MobiDBLite consensus disorder prediction 215 266 - -
Vvi3g0061 678 MobiDBLite consensus disorder prediction 215 229 - -
Vvi3g0061 678 Pfam Dihydrouridine synthase (Dus) 329 597 IPR035587 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi3g0061 Dus 9.7e-52 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0061 K05544 - vvi:100262408 1352.81