Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0060 ATGTCTATGAATCAACTTGATATACCTCAGTTGAATGCGTCATCTCAAATTCGTGCTCCAATGATGCGGCATTTTTCTCCGAATTTTAGTGGTGATAGTAGCAAGAGGCACGGTTTTCCGCCGTCTCATCCACATCAGATCCCACCCATTTCGCCGTATTCCCAGATCCCGGTGCCCCGGCCGGCGAATCAGCAGCTGGTTTCCCAGAATTTCAGCCCGGGACCGTCTCATTCACGATCTTTATCACAGCCGTCATTCTTCTCGCTGGACTCCTTGCCCCCCTTGAGTCCATCGCCCTATCGGGACTCATCATCGACTTCAATTTCTGATGCGGTTTCTGCTGATATCTCAATGGAAGATCGGGATGCGAGCTCGCACTCTGTGCTCCCTCCATCACCATCACCATTTTCCAGGGGCAATTCTATGAGGGTCGGTGAGAATCTTCCTCCTCGGAAGGCACATAGGCGGTCCAGTAGTGATATCCCCTTTGGGTTTTCTTCGATTATGCAATCTTCTCCGCCTCTTATTCCATTAAGGGGTTCAGGTGCTTTGGAGCGGTCCATGTCAGGTAGAGATAATAATATGGCGGCAGCAAAGCCAGTTCAATTGGTTAAAAGAGAATCCAGTTGGGAGAGAGGTGGTGATAGCAATGCAGAGGGGATGGGTGAGAGGAAATCAGAAGGTGAAGTTGTTGACGATTTGCTCTCGGCATATATGAATTTGGACAACATTGATGCGTTGAACTCTCCCGGTACTGAGGAGAAAAATGGTACTGAGAATCGCGAGGATTTGGATAGCAGAGCTAGTGGGACAAAGACGAATGGGGGTGATAGCAGTGACAATGAAGCAGAAAGCAGTGTGAATGAGAGTGGCAACAGTATGCAGAAACTGGGAACTAGTTCTTCAGCTGAGAAGAGGGAAGGAGTCAAAAGAAGTGCAGGTGGTGACATTGCTCCAACCACCCGACATTATAGAAGTGTTTCTATGGATAGTTTTATGGGGAAGATGAACTTCGGTGATGAGTCGCCAAAATTGCTGCCATCGCCAGGAACCCGTCCTGGACAACTATCACCAAGTAATTCAATGGATGGGAATTCAGCGACCTTTAGCTTGGAATTTGGCAATGGAGAATTTAGTGGGGCTGAACTGAAAAAGATTATGGCGAATGAGAAACTTGCTGAGATTGCATTAACTGATCCCAAGCGTGCCAAAAGGATTTTGGCCAATCGTCAATCAGCTGCTCGCTCTAAAGAACGGAAGATGCGTTATATATCAGAATTGGAGCACAAGGTCCAGACATTACAGACAGAAGCTACTACATTGTCTGCCCAGCTAACTTTGTTACAGAGAGATTCTGCTGGACTCACAAGCCAGAACAATGAGTTGAAGTTCCGCCTTCAAGCCATGGAACAACAGGCACAACTTCGAGATGCTCTTAATGAAGCGTTAACTGCGGAGGTCCAGCGATTGAAATTAGCGACTGCAGAGTTGGGTGGGGAATCTCAGGCCTCTAAGTGCCTCGTCCCACAGCTTTCCGTCAACCCCCAAATGTTCCATCTCCACCACCAGCAGCCTACCCAACTCAACATTCACCAGTTGCAGCAACAACAGCAGCAACAACACAATCAGCAGCAGCAGCAGAATGGCAGCACAACCACAAAGCATGAATCAAACCAATAG 1680 0.4798 MSMNQLDIPQLNASSQIRAPMMRHFSPNFSGDSSKRHGFPPSHPHQIPPISPYSQIPVPRPANQQLVSQNFSPGPSHSRSLSQPSFFSLDSLPPLSPSPYRDSSSTSISDAVSADISMEDRDASSHSVLPPSPSPFSRGNSMRVGENLPPRKAHRRSSSDIPFGFSSIMQSSPPLIPLRGSGALERSMSGRDNNMAAAKPVQLVKRESSWERGGDSNAEGMGERKSEGEVVDDLLSAYMNLDNIDALNSPGTEEKNGTENREDLDSRASGTKTNGGDSSDNEAESSVNESGNSMQKLGTSSSAEKREGVKRSAGGDIAPTTRHYRSVSMDSFMGKMNFGDESPKLLPSPGTRPGQLSPSNSMDGNSATFSLEFGNGEFSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATAELGGESQASKCLVPQLSVNPQMFHLHHQQPTQLNIHQLQQQQQQQHNQQQQQNGSTTTKHESNQ* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0060 559 MobiDBLite consensus disorder prediction 205 228 - -
Vvi3g0060 559 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 90 558 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 119 158 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 269 302 - -
Vvi3g0060 559 SUPERFAMILY Leucine zipper domain 401 452 IPR046347 GO:0003700|GO:0006355
Vvi3g0060 559 SMART brlzneu 397 461 IPR004827 GO:0003700|GO:0006355
Vvi3g0060 559 MobiDBLite consensus disorder prediction 529 559 - -
Vvi3g0060 559 CDD bZIP_plant_RF2 402 453 IPR044759 GO:0003700|GO:0006355
Vvi3g0060 559 MobiDBLite consensus disorder prediction 42 56 - -
Vvi3g0060 559 FunFam probable transcription factor PosF21 400 453 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 57 85 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 1 85 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 244 322 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 335 367 - -
Vvi3g0060 559 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 399 462 IPR004827 GO:0003700|GO:0006355
Vvi3g0060 559 MobiDBLite consensus disorder prediction 127 141 - -
Vvi3g0060 559 Pfam bZIP transcription factor 401 459 IPR004827 GO:0003700|GO:0006355
Vvi3g0060 559 Coils Coil 417 472 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 1 35 - -
Vvi3g0060 559 MobiDBLite consensus disorder prediction 352 367 - -
Vvi3g0060 559 Gene3D - 400 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0060 Vvi-Chr3 690178 692892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0060 21 559 bZIP Transcription Factor Family AT4G38900 61.348 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi3g0060 bZIP_1 6.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0060 - - vvi:100255631 937.562