Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0058 ATGGATGATGGTGGGCAGCGGGAAAATGGGAGACATAAACTGGATTATTATAAAGGACCACAGAATCCGTGGAATATGATGCCCCAGCATCATTTGAAGGAACAAAATGCCTTGACAATGAATAAGAAGGTTGTGAACATTCTTGCTGAGAGGGATAATGCTATTCGAGAGCGGAATATAGCCCTATCTGAAAAGAAGGCAGCCTTGGAAGAGCGGGATGAGGCACTAATGCAACGAGATGCTGCAATCTCTGAGCGTGATAATGCCCTTCTGGAACGTGACAATGCTATTGCTGCCCTTCGATATCGAGAAAGTGTCATCTCAATTCAACGTGGAACAAAACGCATGGATCACCCCCCAAATCATGCAGCTAATGGAGCTGAAGGTTCTTACAACACCAGGGAAGTACACATAACTGATGCCTTTCCCATATCAACCATTGCTGCTGATTCTGTCAAGTCGCGCAAGCGAACAAAGGAGAACAAGGCGGTTTCTTCCAAGGGTCTAAAGCCACCAAGGAAGGGAAAGAAAGTAAATGAGGATTTGAACAGGCAGGTCATTTCTGATGGGTTGAAGATAAAGTCTGAGTGGGACAGTCAGGATCTGGGCTTGAATCTAGTCACTTTTGATGAATCCACCATGCCAGTGCCAGTCTGCTCATGCACTGGTGTCCCTCGACAGTGCTACAAATGGGGAAACGGAGGATGGCAATCATCTTGTTGCACGACCACCCTGTCGTCATACCCACTACCACAAATGCCCAACAAGCGCCATGCACGAATGGGTGGCAGGAAGATGAGTGGAAGTGTCTTTACAAGATTGCTCAGCCGACTGGCAGCAGAAGGTCATGATCTCTCAATGCCTCTGGATCTCAAGGACTACTGGGCCAAGCATGGGACAAATCGCTACATCATCATCAAGTAG 924 0.474 MDDGGQRENGRHKLDYYKGPQNPWNMMPQHHLKEQNALTMNKKVVNILAERDNAIRERNIALSEKKAALEERDEALMQRDAAISERDNALLERDNAIAALRYRESVISIQRGTKRMDHPPNHAANGAEGSYNTREVHITDAFPISTIAADSVKSRKRTKENKAVSSKGLKPPRKGKKVNEDLNRQVISDGLKIKSEWDSQDLGLNLVTFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSMPLDLKDYWAKHGTNRYIIIK* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0058 307 MobiDBLite consensus disorder prediction 152 182 - -
Vvi3g0058 307 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g0058 307 Pfam GAGA binding protein-like family 1 307 IPR010409 -
Vvi3g0058 307 PANTHER - 1 307 IPR010409 -
Vvi3g0058 307 MobiDBLite consensus disorder prediction 1 15 - -
Vvi3g0058 307 SMART GAGA_bind_2 1 307 IPR010409 -
Vvi3g0058 307 MobiDBLite consensus disorder prediction 151 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0058 Vvi-Chr3 682969 684062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0058 1 307 BBR or BPC Transcription factor family AT2G21240 61.859 2.51e-135 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vvi3g0058 GAGA_bind 8.6e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0058 - - vvi:100233069 629.017