Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0047 ATGCGAACTCTTTGTGATGCTTGCGAGAGCGCAGCAGCTATCCTGTTCTGCGCCGCAGACGAGGCCGCCCTCTGCCGTGCCTGCGACGAAAAGGTCCATATGTGTAACAAACTTGCTAGTCGGCATGTAAGAGTTGGGCTGGCTGACCCAAGTGATGTTCCTCGATGTGATATATGTGAAAATGCACCTGCTTTCTTTTATTGTGAAGTCGATGGAACTTCTCTTTGCCTGCAATGTGATATGATTGTACATGTTGGAGGTAAAAGAACCCATGGAAGATATCTGCTATTAAGGCAGAGAGTTGAGTTTCCAGGGGATAAGCCTGGCCGTCTTGAGGAACTAAGGTTACAATCTGGTGAGCCTGGTGAAGCAAGAAGGGAACAGAATTGGCCACCTATGATGACATTGAGAGAGACCCAGCCAAATCACATGGCCTCTTCTGTTCCAATGTTAGAGAATAACACTCATGGTGATGGCAAGATGGACAATAAATTGATTGATCTGAATGCTCGGCCCCAAAGAGTACATGGGCAAACTTCAAATAACCAGAGTATGGATGTACATAGTGGCACTAATCATGAATCTGAAAGTGTAGTTCCTGTTGGATCCTTCAAAAGAGAGCCTGAAAAGTAA 633 0.4566 MRTLCDACESAAAILFCAADEAALCRACDEKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGRLEELRLQSGEPGEARREQNWPPMMTLRETQPNHMASSVPMLENNTHGDGKMDNKLIDLNARPQRVHGQTSNNQSMDVHSGTNHESESVVPVGSFKREPEK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0047 210 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vvi3g0047 210 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 - -
Vvi3g0047 210 MobiDBLite consensus disorder prediction 174 210 - -
Vvi3g0047 210 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi3g0047 210 Gene3D Classic Zinc Finger 2 92 - -
Vvi3g0047 210 FunFam B-box zinc finger protein 19 2 92 - -
Vvi3g0047 210 CDD Bbox1_BBX-like 56 96 - -
Vvi3g0047 210 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vvi3g0047 210 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vvi3g0047 210 CDD Bbox1_BBX-like 4 47 - -
Vvi3g0047 210 MobiDBLite consensus disorder prediction 174 198 - -
Vvi3g0047 210 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Vvi3g0047 210 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0047 Vvi-Chr3 596303 598436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0047 1 210 C2C2-CO-like Transcription Factor Family AT4G38960 62.857 8.30e-91 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vvi3g0047 zf-B_box 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0047 - - vvi:100257242 442.195