Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0040 ATGGAGGAGGAAGACGACGCTTTAAACGACGGCTACAAACCGCCCTCTCCACGGCAAGGGGACTCGGCCATTGGTGACGAAGTGCTTCCGCAAAGCATCGACCAATGCGACGTCGTTTCAGAGCTGGACGATTCGCAGCTTGTGGGCGCCGCGTCTCCTGCTGCTGTTGCGGAGCCGGAGGAGGAAGAGGACGTGGAGGCGATCGCGGGAGAGGAGGCGGAGGCGGAGGCAGAGGCTGAGGCGGAGGCGGAGGCCGGCGTGGAGGTCGCGGAGGGAGGTCGAGGCGGCGGGGGCAGGAGGAAGAGGGGCCGGAATCCTAGGGTTCCAGCGCGGGCTCCGCTGAAGAAGTCGTTTGAGGAGGACGTTTGCTTCATTTGCTTCGATGGCGGTGATCTTGTGCTCTGTGATCGCAGGGGATGCCCTAAGGCCTACCATACTACGTGTGTTAATCGTGACGAGGAATTCTTTCGAGCCAAGGGCAAATGGAATTGTGGTTGGCATCAATGTACTGCTTGTGAGAAGAATTCCTATTATATGTGTTTGACATGTCCATTTTCCTTGTGCAAGAACTGCATCAAAGATTCTGTTATCTTTTGTGTTAGAGAAAACAAAGGCTTCTGTGAGGCATGCATGAAAATTATCATGTTGATTGAAAAAAATGAGCAGGGAAACAAGGAAATGGATCAAGTTGATTTCGATGACAAAAGTAGCTGGGAGTTCCTCTTCAAGGATTACTGGATAGATTTAAAAGGAAGGCTATCTCTAACATCAGATGAACTTGCTCAGGCTAAAAATCCGTGGAAAGGGTCTGATGCACCTGCTGGAAAACAGGAAGCACCGGATGAACCCAATGATGTTTACAATGATGGTGGTCCTGGTTCAGACAGTTCCTCTGGAAATGTAGAAGCAAGGAAGCCCAAAAGAAGAAAGGCCAAGAAACGGTTGAAGTCACTCAATAAGGAGAGGGATTCACCGAGTGTAGCAACAGCAATTGGAGCAGAAGGAACGTCTACGCCTGCCAACACTGAGTGGGCATCAAAAGAGCTCTTGGAGTTTGTTATGCATATGAAGAATGGGGACAAATCCGTTACAAGTCAGTTTGATGTACAAGCCCTCTTGCTAGAATATATAAAAAGAAACAAACTTCGTGATCCTCGCCGAAAAAGTCAAATAATTTGCGATTCAAGACTTGAATATCTTTTTGGAAAACCACGTGTTGGGCATTTTGAAATGTTAAAACTTCTTGAGTCTCACTTTCTTAATAAAGAGGATTCACAGACAGATGATCTACAAGGGAGTGTTGTTGATAGTGAAGCTAGTCAGTTGGAGGTTGATGGTAATACCGACACCCTAATGAAAGTGGGTAAAGATAGGAGACGTAAAGCACGTAAAAAGGGTGATGAGAGAGGATCTCAATCAAATCTTGATGATTATGCAGCTATTGATATCCACAACATTAGCTTAATTTATTTACGGCGTAATTTGATGGAGGATTTAATTGAAGATACTGAAAAGTTACATGACAAGGTGGTTGGTGCTTTTGTGAGAATAAGGATTTCCGGTAGTGGACAAAAGCAAGATGTGTATAGGCTAGTCCAAGTTGTAGGTACAAGCAAAGCAGCTGATCCATATAAAGTTGGCAAAAGGACAACAGAAGTTATGCTAGAAATTTTAAATTTAAGCAAGACAGAAATCATATCAATTGATATAATTTCAAATCAGGAGTTCACTGAGGACGAATGTATGCGTCTACGTCAGAGTATAAAATGTGGATTAATCACCCCATTGACAGTGGGTGGCATTCTGGAAAAAGCGTTAGCACTTCAAGCAGTCAGAGTCAAGGATTGGCTGGAAACAGAGATTGTGCGGCTTAGTCATCTTCGCGATCGAGCTAGTGAAAAGGGGCGCAGAAAGGAGCTTAGGGAATGTGTCGAGAAATTGCAGCGTTTGAAGACAGCTGAGGAGCGCCAGCGCAGGCTTGAGGAAATTCCAGAAGTCCATGCAGACCCAAATATGGATCCAAGTTACGAGTCTGAGGAAGATGAAAGTGAGACAGATGACAAGAGACAAGAAAATCATTTGAGACCAAGAGATACAGGCTTTAGCAGGAAGAGGATGGAACCTAGCTCTTCAAGGAAAGGAGATTCTGGTTCAAATTATTCCTGGAGTACACCAACAAAAAATTCTAGTAGAAACTGGGAATTCAGCAGAAGTATGTCAAATAAAGTTTTTTCAAGCAAAAGTGAAGATGTTGCTAGCCCTGATGAGATCATGAATGAGGATTCATGGAATAGAAGAGACACACAGAAACTGAGCAGGTGGGAGAAGATAAGTGGTTCTAATTCTGAAGTTGGTGGCTGGAATAGCCATTCAGTGGTAAGATCTGAATCATTTTCAACCGTGCCATTAGAAAGTCCCATGGCATCCCATTCAGGAGTAAGATCAGAATCATTTTCTGGAATTGCATTAGACAGTTCTGTGGCAGCCCATTCAGTGGGAAGGTCTGAATCATTTTCTGGAGTTGCATTAGAAAGTTCCTCCGGACCTCCCTTGACAGGGGTAGAACCAACTGCTGCCAAACTCAGTGAAACGGACAAAATGTGGCATTACCAAGATCCTTCTGGAAGAGTCCAAGGACCATTTTCTCTGGTGCAGCTGCGGAAATGGAGTAATAGTGGGTTCTTCCCCAAGGATCTCAGAATTTGGAGAACTACTGAAAAGCAGGATGACTCTGCACTTTTGACTGACGTATTGTTCGCAGCATTCCCAAAAGATTCATCACCAGTTGACAACAGCATTGGAAAGTCCCAAAATGTGCATACTCTGCCTCACCCATCCACAGATTCTGGAAAGCCATATGAATCATCCTTGCAGCAAGTAGGTGAAAATCAAGGTGGGGAGAAGCCAAATCTTGATCATAGAGGAGAAAATTGGAGATCTCAACAAGAGGTTAGTTTGTCCAAGGGCTGGGCTGCTTCATCTATGGTTGAGGCTCCTAAACTTTCCACAGATGGTTCAGTTTCTGACTATGATGGCAGGAATGATTTGGCAAACCTCCCTTCTCCCACTCCTGCCCAAAGCACCACTGGTTGGGTTGCTGGGCAAGCTCCTGATAAAAAAGGCACAGCCACTGAGTTTCCTGTTCAACCAGCAGTGGATCCATTTTTAGGTTCCTCTGGAACGCTATTATCTCCTACTGCAGTGACCTCAGAGAATGGCCAGTTGATACATTCTTCTACTTCACCATCTTCAGTCAAGCAGAGTGCAGGTGTTGATAGTTCAGATCTATCTTTTGCATCATTCAGCCAACAAACAAGTGTTCCTGGTAGGAAAGAACATAATGTGATTGAGCTTTTAGGAGCATTGGTGCCTAGTTCAGTCTCAAATTCCTCTGCAAATGCTCCAGAGGTTCATCCTCAATCGTCTGTGTCAGGTGAATCACAGAGTGTTCAGGCAGATGCATATCCACTTGCTGCACCTGATTTTGCTGCTGGCTCAATGAACCCAGGTGCTACTGATTCTAAAGTTGCAGGTGCAAGTCTCCCAAACCTGGTTCATTCTGTTGCGGGTCTTAGCCATCCTGTTGAAACTCATGGATGGGGGTCTGGTTCAATTTCAAAGCCAGAAATAGTATCTTCCTGCCCAGTATCTGGGGGTGAATCTCAAACCTGGGGATATGGTCCACCTCAGAAGCTAGAACGAAATAATTCTATTCCTATGCATTCACAACAGCCACCATATGGTCACTGGGTTGATGCTTCTTCTATCCATAATTCTGCTTCATCTCTTGGCACAGGAAATCTAGCTGGGTATTTCCCTAGTCCAGGCCTAGGTTTGCCTCTATCTGATTCTTGGAGACCTCAAGTTCCAAGTAATCCACCAAACTTCCAGCCTCCACCTCCTGGCAACCTTGGTCCTCCGGCTCTGCCCAACCTAGCTCCTTCTGTTCCACCTAACATGGGCCCTCGAGCTCCACCCAGCTTTGGCCCTCCAGCTCCAACCAATCTAGGCCATCCAACCCCACCCAATCTGGGCCCCCCAGCTCCACCTAACCTGAACCCTCTGCCTCCACCTCCAATCCTGACTCCTTCAGTGCCACCCAATATGATCTCTGCAGCCCCACCCAACCTAGTCCCTCTTGGTCCACCAAACATTATCCCTCCGGGTCCACCCAACATGATCTCCCCTGCTCCACCCGCTATGATCCCACCGGCCCCACCCAACCTGGCTCCAGCTGCCCCACCCAACCTACCTTGGGGTATGGGTGTTGCAGAAAATCCAAGTGCTGCCCCAAGGCCAGGGCCACAGAATCCAAATGCTGGCTGGGGTCCAATGCCTGGAAATCCAAATATGAGCTGGGGACCAGTACCAGGAAACACAAACATGAACTGGGGAGCTTCTGGTCAAGCGTCAGCACCTGGAAATGCAATTCCAAGTTGGGTTGCACCAACAGGGAACCAAGGCATGTGGGGAAGTGACCAAAATCATAATGGTGATAGATTCTCAGGTCAAAGGGACAGGGGTTCCCAGGGTGGAGATCCTGGTTATGGCGGGGGCAGACCTTGGAATCGCCAATCATCATTTGGCAATGGAGGGGGAGGAGGTTCTGGTAGATCAACCCCTAAAGGGCAGAGATTGTGTGTGTATCATGAGAATGGGCATTGCAAGAAGGGAGCATCATGTGATTATCGGCACAGTTGA 4701 0.4703 MEEEDDALNDGYKPPSPRQGDSAIGDEVLPQSIDQCDVVSELDDSQLVGAASPAAVAEPEEEEDVEAIAGEEAEAEAEAEAEAEAGVEVAEGGRGGGGRRKRGRNPRVPARAPLKKSFEEDVCFICFDGGDLVLCDRRGCPKAYHTTCVNRDEEFFRAKGKWNCGWHQCTACEKNSYYMCLTCPFSLCKNCIKDSVIFCVRENKGFCEACMKIIMLIEKNEQGNKEMDQVDFDDKSSWEFLFKDYWIDLKGRLSLTSDELAQAKNPWKGSDAPAGKQEAPDEPNDVYNDGGPGSDSSSGNVEARKPKRRKAKKRLKSLNKERDSPSVATAIGAEGTSTPANTEWASKELLEFVMHMKNGDKSVTSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLEYLFGKPRVGHFEMLKLLESHFLNKEDSQTDDLQGSVVDSEASQLEVDGNTDTLMKVGKDRRRKARKKGDERGSQSNLDDYAAIDIHNISLIYLRRNLMEDLIEDTEKLHDKVVGAFVRIRISGSGQKQDVYRLVQVVGTSKAADPYKVGKRTTEVMLEILNLSKTEIISIDIISNQEFTEDECMRLRQSIKCGLITPLTVGGILEKALALQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQRLKTAEERQRRLEEIPEVHADPNMDPSYESEEDESETDDKRQENHLRPRDTGFSRKRMEPSSSRKGDSGSNYSWSTPTKNSSRNWEFSRSMSNKVFSSKSEDVASPDEIMNEDSWNRRDTQKLSRWEKISGSNSEVGGWNSHSVVRSESFSTVPLESPMASHSGVRSESFSGIALDSSVAAHSVGRSESFSGVALESSSGPPLTGVEPTAAKLSETDKMWHYQDPSGRVQGPFSLVQLRKWSNSGFFPKDLRIWRTTEKQDDSALLTDVLFAAFPKDSSPVDNSIGKSQNVHTLPHPSTDSGKPYESSLQQVGENQGGEKPNLDHRGENWRSQQEVSLSKGWAASSMVEAPKLSTDGSVSDYDGRNDLANLPSPTPAQSTTGWVAGQAPDKKGTATEFPVQPAVDPFLGSSGTLLSPTAVTSENGQLIHSSTSPSSVKQSAGVDSSDLSFASFSQQTSVPGRKEHNVIELLGALVPSSVSNSSANAPEVHPQSSVSGESQSVQADAYPLAAPDFAAGSMNPGATDSKVAGASLPNLVHSVAGLSHPVETHGWGSGSISKPEIVSSCPVSGGESQTWGYGPPQKLERNNSIPMHSQQPPYGHWVDASSIHNSASSLGTGNLAGYFPSPGLGLPLSDSWRPQVPSNPPNFQPPPPGNLGPPALPNLAPSVPPNMGPRAPPSFGPPAPTNLGHPTPPNLGPPAPPNLNPLPPPPILTPSVPPNMISAAPPNLVPLGPPNIIPPGPPNMISPAPPAMIPPAPPNLAPAAPPNLPWGMGVAENPSAAPRPGPQNPNAGWGPMPGNPNMSWGPVPGNTNMNWGASGQASAPGNAIPSWVAPTGNQGMWGSDQNHNGDRFSGQRDRGSQGGDPGYGGGRPWNRQSSFGNGGGGGSGRSTPKGQRLCVYHENGHCKKGASCDYRHS* 1567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1059 1095 - -
Vvi3g0040 1566 FunFam Zinc finger CCCH domain-containing protein 19 481 610 - -
Vvi3g0040 1566 Gene3D - 866 926 IPR035445 -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 57 85 - -
Vvi3g0040 1566 FunFam Zinc finger CCCH domain-containing protein 19 112 212 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1211 1243 - -
Vvi3g0040 1566 Pfam SWIB/MDM2 domain 346 419 IPR003121 -
Vvi3g0040 1566 SUPERFAMILY GYF domain 860 918 IPR035445 -
Vvi3g0040 1566 ProSiteProfiles Plus3 domain profile. 480 613 IPR004343 GO:0003677
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 686 711 - -
Vvi3g0040 1566 SMART PHD_3 122 168 IPR001965 -
Vvi3g0040 1566 Pfam Plus-3 domain 485 588 IPR004343 GO:0003677
Vvi3g0040 1566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 214 IPR013083 -
Vvi3g0040 1566 ProSiteProfiles SWIB/MDM2 domain profile. 338 421 IPR003121 -
Vvi3g0040 1566 SMART swib_2 363 424 IPR019835 -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 654 674 - -
Vvi3g0040 1566 Coils Coil 636 663 - -
Vvi3g0040 1566 SUPERFAMILY SWIB/MDM2 domain 342 424 IPR036885 -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 49 109 - -
Vvi3g0040 1566 Gene3D - 481 610 IPR036128 GO:0003677
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1 31 - -
Vvi3g0040 1566 CDD SWIB-MDM2_like 344 419 - -
Vvi3g0040 1566 ProSiteProfiles Zinc finger C3H1-type profile. 1541 1566 IPR000571 GO:0046872
Vvi3g0040 1566 CDD GYF 865 919 IPR003169 GO:0005515
Vvi3g0040 1566 SUPERFAMILY Plus3-like 481 609 IPR036128 GO:0003677
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1291 1360 - -
Vvi3g0040 1566 FunFam Zinc finger CCCH domain-containing protein 19 332 426 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1019 1033 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1423 1544 - -
Vvi3g0040 1566 ProSitePatterns Zinc finger PHD-type signature. 123 183 IPR019786 -
Vvi3g0040 1566 SUPERFAMILY FYVE/PHD zinc finger 119 172 IPR011011 -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 929 965 - -
Vvi3g0040 1566 SMART gyf_5 866 921 IPR003169 GO:0005515
Vvi3g0040 1566 Gene3D SWIB/MDM2 domain 334 429 IPR036885 -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1453 1498 - -
Vvi3g0040 1566 ProSiteProfiles Zinc finger PHD-type profile. 120 186 IPR019787 -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 264 334 - -
Vvi3g0040 1566 Pfam GYF domain 868 908 IPR003169 GO:0005515
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1282 1360 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 759 773 - -
Vvi3g0040 1566 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 22 1566 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 712 748 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1127 1151 - -
Vvi3g0040 1566 SMART rtf1 480 590 IPR004343 GO:0003677
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 925 1095 - -
Vvi3g0040 1566 ProSiteProfiles GYF domain profile. 865 919 IPR003169 GO:0005515
Vvi3g0040 1566 CDD PHD5_NSD 122 167 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 1211 1244 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 774 788 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 654 788 - -
Vvi3g0040 1566 MobiDBLite consensus disorder prediction 446 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0040 Vvi-Chr3 532527 544775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0040 120 207 PHD Transcription Factor Family AT5G36670 34.000 1.53e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vvi3g0040 Plus-3 1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0040 - - vvi:104878757 2801.54