Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0031 ATGAAGACGACCCCGCAGGTGTTGTATGATGATGTATTGTGTGGTGCCGGAGTTAATGGCGTTTCAGGCGAGGACTTCTCCGTTGACGACCTTTTTGACTTTTCTAATGGGGGGTTAGGAGTTGGGTTTGAAGGGGAAGAGGAGGAGGAGGAGGAGGAAGAGAAGGACTCGTTTTCTTGGTCTTCTCTAGAAAGAGTTGACGATGATAACTCAAATTCCAGCAGTTTCTCCGGCACCGGAGATTTTGAGTCCCTTTCGGCGGGAGGACTAGCCGTTCCTGCTGACGATTTGGAGCACCTTGAATGGTTATCTCACTTTGTAGACGATTCTTCAGCGTCGGAGCTCTCTCTTCTATGCCCCGCCGTTACCGGAAACTCTCCGTCAAAGCGGTGCGAAGAAGAGCCTAGGCCGGCGTTGTTGAGAACTCCGCTATTTCCGACGCCGCTTCCGGCAAAGCCCAGAAGCAAACGGCACAGAAGCAGCGGTCGTGCCTGGGCTTTTGGGTCTCATTCACCATCTTCGTCTCCTTCCTCTTCGTCGTCCTCGTCTTCAACGTCTTGCTTGATATTCGCCAACACCGTTCACAACATGGAGTCGTTTTACAGTCTCGAAAAGCCGCCGGCGAAGAAGCCCAAAAAGTCACCGTCGGCGGACTCTCAGCCGCAGCGGCGCTGCAGCCATTGCCTGGTTCAGAAGACCCCACAGTGGCGAACCGGGCCACTCGGCCCAAAAACCCTCTGCAACGCTTGTGGGGTTCGTTTCAAATCCGGCCGGCTCTTCCCGGAGTACAGACCAGCCTGCAGTCCAACTTTCTCCGTCGAAATCCACTCCAACAGCCACCGGAAAGTCCTAGAAATTCGGCGAAAGAAGGAGACAGCTGAACCTGTGTCCGGCTAA 897 0.5429 MKTTPQVLYDDVLCGAGVNGVSGEDFSVDDLFDFSNGGLGVGFEGEEEEEEEEEKDSFSWSSLERVDDDNSNSSSFSGTGDFESLSAGGLAVPADDLEHLEWLSHFVDDSSASELSLLCPAVTGNSPSKRCEEEPRPALLRTPLFPTPLPAKPRSKRHRSSGRAWAFGSHSPSSSPSSSSSSSSTSCLIFANTVHNMESFYSLEKPPAKKPKKSPSADSQPQRRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSVEIHSNSHRKVLEIRRKKETAEPVSG* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0031 298 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Vvi3g0031 298 Gene3D - 216 293 IPR013088 GO:0006355|GO:0008270
Vvi3g0031 298 PIRSF Txn_fac_GATA_plant 10 297 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi3g0031 298 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Vvi3g0031 298 MobiDBLite consensus disorder prediction 166 183 - -
Vvi3g0031 298 FunFam GATA transcription factor 216 297 - -
Vvi3g0031 298 SMART GATA_3 219 269 IPR000679 GO:0006355|GO:0043565
Vvi3g0031 298 MobiDBLite consensus disorder prediction 123 183 - -
Vvi3g0031 298 PANTHER GATA TRANSCRIPTION FACTOR 22 292 - -
Vvi3g0031 298 MobiDBLite consensus disorder prediction 43 57 - -
Vvi3g0031 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 281 - -
Vvi3g0031 298 CDD ZnF_GATA 224 281 IPR000679 GO:0006355|GO:0043565
Vvi3g0031 298 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Vvi3g0031 298 MobiDBLite consensus disorder prediction 203 226 - -
Vvi3g0031 298 MobiDBLite consensus disorder prediction 38 80 - -
Vvi3g0031 298 MobiDBLite consensus disorder prediction 64 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0031 Vvi-Chr3 452955 453936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0031 1 291 C2C2-Gata Transcription Factor Family AT5G66320 47.896 1.58e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi3g0031 GATA 1.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0031 - - vvi:100255460 522.702