LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0030	ATGGGTAAAATCCCCTCTCGCTGGCATGGGACATGTCAAGAAGGAGAACAATTTAACCGCTCCAACTGCAACAGGAAAATAATCGGTGCGCGTTGGTATATCAAAGGATATGAGGCTGATTTTGGAAAGCTGGATACAAGTGGGGGTGTTGAATTCTTGTCTCCTAGGGATGCAGTAGGCCATGGTACTCACACTGCTTCAATCGCTGCGGGTTCTCTAGTAAAAAATGCAAACTTTAGGGGACTAGCTCGAGGATTGGCAAGAGGGGGGGCTCCATCAGCTCAGTTAGCTGTCTACAAAGTCTGCTGGTCTACTGGTGGATGCAGCTCAGCGGATGTTCTTGCTGCATTTGATGATGCTGTTCTTGATGGGGTGGATGTTCTCTCAGTGTCCCTGGGCTCATCCCCGCCACTTACTGCTTATTTTGATGATTCTTTGGCCATTGGTTCCTTCCATGCTGTAGCTAAAGGGATTTCTGTTGTATGCTCTGCTGGTAACTCTGGCCCTTACCCTCAAACCGTCATCAATACGGCTCCATGGATCATATCAGTTGCAGCCAGCACCATTGATAGAGCTTTCCGAACTGTGATTACCTTGGGGAACAACCAAACTCTTGTGGGACAGGCTTTGTATACAGGGAAGAATGTGAATAAGTTCTACTCTTTTGTGTATGGAGAAAGCATTGTCTCACAAGATTCAGATGAAGAAAGCGCAAGAGGTTGTGACATAGGAAGCTTGAATGCTACTTTAGCAAGAGGAAATGTTGTTCTCTGTTTCCAAACTCGGTCTCAGAGGTTCTCTGCCACTGCAATAAGAACTGTACAAACAGTTGGGGGTGTTGGACTCATTTTTGCCAAGTCTCCCAGTAAGGATGTTACACAATCTATGGGAATCCCCTGTGTCGAGGTGGACTTGGTTACAGGGACATCTCTGCTGACGTACATGGTGTCGACCAGCAAGCCTATGGTCAAGTTTAGTCCCACAAAGACAAAGGTGGGACTACAGAGTTCCCCAGAGGTGGCTTACTTCTCTTCCAGAGGACCCAGTTCTCTTTCTCCCTCTGTGTTGAAGCCTGATATTGCTGCTCCTGGGGTGAGTATATTGGCTGCCTGGTCTCCTGCTGCTTCTTCCCCCACAATTGATATGACTCAAAAAGAATTACCTCCTGAGAACTTCATGATTGAGTCAGGAACCTCCATGGCTTGTCCCCATGTTTCCGGCATTGTGGCTCTTCTCAATTCCATGTACCCCACCTGGAGTCCTGCTGCAATCAAGTCTGCTCTTATCACAACAGCCTCTGTGAAGGATGAGTATGGTCTAAATGTAGTGGCTGAGGGAGCTCCATACAAGCAAGCCGACCCGTTTGATTATGGAGGTGGTCATGTAGATCCTAACAAGGCCATGGACCCTGGTCTCATATATGACATGGGAATGAAAGACTATGTCCATTTTCTGTGTTCCATGGGCTACAACACCACTGCTATCCACTTAATCACCAAGTCCCCATGCCCCAAAAACCGAAACCGAAACCTCCTCCTGAACCTTAATCTTCCTTCCATCATCATTCCCAATCTGAAGAAGAGCTTAGCAGTATCAAGAACAGTGACAAATGTTGGTCCAGAAGAGTCTGTGTACATAGCCCAGGTTGAAGCTCCTCCAGGCACAAATGTTAGAGTGGAGCCATGGATTTTATCATTCAATTCCACCACAAAGAAGCTAAAGTTCAAGGTATTCTTTTGTTCCCGGCAAAGACTACTAGGAAGATATTCATTTGGGCATCTGTTGTGGGGAGACGGCTTCCATGCAGTGAGAATACCATTGATCATCGGAACCGTAACTGCAGATTTGTAA	1851	0.4679	MGKIPSRWHGTCQEGEQFNRSNCNRKIIGARWYIKGYEADFGKLDTSGGVEFLSPRDAVGHGTHTASIAAGSLVKNANFRGLARGLARGGAPSAQLAVYKVCWSTGGCSSADVLAAFDDAVLDGVDVLSVSLGSSPPLTAYFDDSLAIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWIISVAASTIDRAFRTVITLGNNQTLVGQALYTGKNVNKFYSFVYGESIVSQDSDEESARGCDIGSLNATLARGNVVLCFQTRSQRFSATAIRTVQTVGGVGLIFAKSPSKDVTQSMGIPCVEVDLVTGTSLLTYMVSTSKPMVKFSPTKTKVGLQSSPEVAYFSSRGPSSLSPSVLKPDIAAPGVSILAAWSPAASSPTIDMTQKELPPENFMIESGTSMACPHVSGIVALLNSMYPTWSPAAIKSALITTASVKDEYGLNVVAEGAPYKQADPFDYGGGHVDPNKAMDPGLIYDMGMKDYVHFLCSMGYNTTAIHLITKSPCPKNRNRNLLLNLNLPSIIIPNLKKSLAVSRTVTNVGPEESVYIAQVEAPPGTNVRVEPWILSFNSTTKKLKFKVFFCSRQRLLGRYSFGHLLWGDGFHAVRIPLIIGTVTADL*	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0030	616	SUPERFAMILY	Subtilisin-like	22	472	IPR036852	GO:0004252\|GO:0006508
	Vvi3g0030	616	Gene3D	-	485	612	-	-
	Vvi3g0030	616	CDD	Peptidases_S8_3	1	433	IPR034197	-
	Vvi3g0030	616	CDD	PA_subtilisin_like	196	324	-	-
	Vvi3g0030	616	ProSitePatterns	Serine proteases, subtilase family, serine active site.	397	407	IPR023828	-
	Vvi3g0030	616	Gene3D	Peptidase S8/S53 domain	1	481	IPR036852	GO:0004252\|GO:0006508
	Vvi3g0030	616	Pfam	Fibronectin type-III domain	514	609	IPR041469	-
	Vvi3g0030	616	FunFam	subtilisin-like protease SBT1.5	190	332	-	-
	Vvi3g0030	616	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	468	-	-
	Vvi3g0030	616	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	1	607	IPR045051	-
	Vvi3g0030	616	Pfam	Subtilase family	56	433	IPR000209	GO:0006508\|GO:0008236
	Vvi3g0030	616	FunFam	Subtilisin-like protease SBT1.5	485	612	-	-
	Vvi3g0030	616	FunFam	Subtilisin-like protease SBT1.5	1	201	-	-
	Vvi3g0030	616	Gene3D	-	190	332	-	-
	Vvi3g0030	616	PRINTS	Subtilisin serine protease family (S8) signature	57	70	IPR015500	-
	Vvi3g0030	616	PRINTS	Subtilisin serine protease family (S8) signature	396	412	IPR015500	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0030	Vvi-Chr3	442199	445043	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g0030	1	611	Subtilisin-like Serine Gene Family	AT4G10550	49.518	0.0	570

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0030	-		-	vvi:100260528	1156.74