Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0021 ATGAAGATTCAGTGTAGTTTTTGTAGTAAAGAAGAGGCCTCTGTTTTCTGTACTGCAGACGAAGCACCCCTTTGTGATATCTGCGACCGTCAGGTCCACCATGCAAACAAGCTTGCCGGAAAGCACAAGCGCTACTCCCTCCTCCGCCCTTCCGACAAGGACTTCCCTTCCTGTGACCTTTGCCAAGATAAGCGTGCCTTTCTTTTCTGTAAAGAAGATAGAGCAATTCTCTGTAGAGAATGCGATGTTTCAATTCACAAGGCCAATGAGCACACCCGGAAACACTACAGGTTCCTTCTCACAGGTGTGAAGCTTTCCGCTTCTGCTTCTGAGTACCCAATCTCAGCGTCATCTTCATCGCCCTCCACCATTGATTCCGAGACCAAACCCTCTAAATCATCAACAAAAAGACCCACTTCAGTTTCTGCCGATATCTTCTGCAACACCGCCATTGGTGCTGAGATCAAACCCTCTAAAACATCTACAAAAAGACCCACTTCAGTTTCCGCCGGTATTTCCAACCCAACTGTGAAAACAGCCCCAGCAGCAGCTTCTTACAAGAGGGATCATGACAATCAAAGTATCTCTGAGTACTTGATGGAGACGCTACCAGGATGGCGGGTGGACGATTTTCTTGATCCTTCTTCTGGTTTCAGTGAGTTTCCGGATCATGGCGTTGGAACCCATCTGAGCTCGTTTCCATATGAGGATTTCGCCGTCTGGGTACCTCAAGATACACCTCAGTTCAATCACCTTCCTCTCTACATTCCTCAGACAGGTGGGGGAAATGGACTCAAGGCCTCTGAGGAAGCGAACACGGTGAAAGTTAGCCGGAAAAGGATTGACGATGGGTTTACAGTTCCTGAAATCAGCACTCTACCTCTCAAGAAATCAAGAAATCTTTGGTAG 909 0.4752 MKIQCSFCSKEEASVFCTADEAPLCDICDRQVHHANKLAGKHKRYSLLRPSDKDFPSCDLCQDKRAFLFCKEDRAILCRECDVSIHKANEHTRKHYRFLLTGVKLSASASEYPISASSSSPSTIDSETKPSKSSTKRPTSVSADIFCNTAIGAEIKPSKTSTKRPTSVSAGISNPTVKTAPAAASYKRDHDNQSISEYLMETLPGWRVDDFLDPSSGFSEFPDHGVGTHLSSFPYEDFAVWVPQDTPQFNHLPLYIPQTGGGNGLKASEEANTVKVSRKRIDDGFTVPEISTLPLKKSRNLW* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0021 302 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi3g0021 302 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vvi3g0021 302 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi3g0021 302 MobiDBLite consensus disorder prediction 113 140 - -
Vvi3g0021 302 FunFam B-box zinc finger protein 21 1 98 - -
Vvi3g0021 302 CDD Bbox1_BBX-like 5 47 - -
Vvi3g0021 302 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi3g0021 302 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 292 - -
Vvi3g0021 302 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Vvi3g0021 302 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi3g0021 302 CDD Bbox1_BBX-like 58 100 - -
Vvi3g0021 302 Gene3D Classic Zinc Finger 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0021 Vvi-Chr3 310992 312061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0021 1 302 C2C2-CO-like Transcription Factor Family AT1G75540 41.408 1.07e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vvi3g0021 zf-B_box 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0021 - - vvi:100241912 585.489