Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0019 ATGATGCTGATGATGAGGCAAGGAGGATCACGAAGCTTGAGCTGCCAAGACTGTGGAAACCAAGCAAAGAAGGACTGTCTTCACATGAGATGCAGAACCTGCTGTAAAGGCCGAGGGTTTCAGTGCCAGACCCATGTCAAGAGCACTTGGGTTCCTGTATATAGAAGGCGCCAGAGGCAACAACACCTTCCCGCTACTACCGTTCCTCAACAGCTCCTCCAAGGACACAACCCTAGACCTACATCATCAGGGTCGGAGGCGAGGAATTTTCCGGCTGAAGTGAGTTCTCCGGCGATGTTTCGCCGTGTTAGGGTGAACTCCATCGACAATGCAGTTGATCAGTATGCATATCAGACGGCTGTGATCATCGGAGGCCATATTTTCAAGGGTATTCTCTATGATGAAGGCCCTGAAATTCAGTTCATCGGTGGCGGTGAGAGCTTATTTCCTCAACTGCAGCAGCCAACCATAGTTGCTAGTACCTTCACTGCTGCCATGGAACTTCTCCATCCTTCTTCTTCATACCCAATTAACAGCACTAGTACTACTACTGCTCCTGTGCCTGGTACGCACGTTATCCCACATCGAAGATCTTGA 597 0.4975 MMLMMRQGGSRSLSCQDCGNQAKKDCLHMRCRTCCKGRGFQCQTHVKSTWVPVYRRRQRQQHLPATTVPQQLLQGHNPRPTSSGSEARNFPAEVSSPAMFRRVRVNSIDNAVDQYAYQTAVIIGGHIFKGILYDEGPEIQFIGGGESLFPQLQQPTIVASTFTAAMELLHPSSSYPINSTSTTTAPVPGTHVIPHRRS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0019 198 NCBIfam putative zinc finger domain, LRP1 type 14 56 IPR006510 -
Vvi3g0019 198 MobiDBLite consensus disorder prediction 177 198 - -
Vvi3g0019 198 MobiDBLite consensus disorder prediction 61 89 - -
Vvi3g0019 198 Pfam Domain of unknown function (DUF702) 13 138 - -
Vvi3g0019 198 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 7 166 IPR007818 GO:0003700|GO:0006355
Vvi3g0019 198 NCBIfam LRP1 C-terminal domain 90 137 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0019 Vvi-Chr3 288653 289505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0019 1 147 C2H2 Transcription Factor Family AT5G66350 52.410 1.21e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vvi3g0019 DUF702 1.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0019 - - vvi:100257301 393.275