Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0018 | ATGGCTTCCGATTCTTCTCCGGCCAACATCAATGGCGGACCTTCCTCTCCCGATGACTCGTACTCGAGCCCGATCGGCAACACTTTCTCGTCCCCAGGCGATGGCACTCGCCGGAGAAGAGGGCGGCGGCCGTCCGCGTCTCCTGCATTTGCGACTCCGCCACATCCACACTCCCGATTCGCCGCTTCTGAGACAACGCCAACTCCGTCTGAGGCAACCCCAACACCCTCTAGCGGACGCCGGAGAAGGGGATCTAGAAGGGCTTCCGTGTCCACTCCAATTGCCACGCCTTCATCAACTGATGAAGCACCGCCTTCGTCTGAAGGTGAAGGGGATGACATGGATGAAGCTCCACCGATGTTCGTGTGGGGCACGAACATTAGCGTGCAGGATGTAAATGCTGCAATTCTTAGGTTTTTAAGGCATTTTCGTGAACACCCATCTCATACAGAGGGGAAGTACATGAGAGCCATACACAGAGTTCTTGAAATAGAGGGAGAATCACTTGATGTGGATGCCCACGATGTGTTTGATTATGACTCGGACCTTTACACCAAGATGGTTAGATACCCACTTGAGGTTCTTGCGATATTTGACATTGTTTTGATGGACATGGTCAGTAGAATCAATCCGCTGTTTGAAAAGCATATCCAGGCTCGCATTTTTAATCTCAAGACATCAACATCGATGAGAAATCTCAACCCATCTGATATTGAGAAGATGGTGTCATTGAAAGGGATGATTATTCGGTGTAGTTCAATTATACCTGAAATCAGGGAAGCAGTATTTAGATGCCTTGTATGTAGACACTACTCTGACCCCATTGTTGTGGATCGAGGGCGAATCAATGAACCAACAACTTGTGGGAGGCCTGAGTGTCTTGCCAAGAACTCCATGACACTGATTCACAACCGATGCAGGTTTGCTGATAAGCAAATTGTGAGGCTTCAAGAGACACCAGATGATATCCCTGAGGGAGGGACACCACACACTGTGAGTTTGTTGATGCATGACAAGCTGGTGGACGCTGGAAAGCCCGGTGACAGAGTTGAGGTGACTGGAATTTACAGGGCTATGAGTGTCAGAGTCGGACCAACACAGAGAACCGTTAAATCTTTATTCAAGACTTACATTGACTGTCTTCATTTAAAGAAGACTGACAAGTCAAGAATGCAAGCAGAGGATCCCATGGAAGTTGAAAATGGCTCAGGTAGAAATGAAGAAGACACCCTGCTTGGCTATGAAGACAAGGTGGCACAATTAAAGGAGCTGTCAAAGCAGCCTGATATATATGACCGACTGACCAGGTCTTTGGCACCAAACATCTGGGAGCTGGATGATGTGAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGGAGTGCTTTGAAGTTGCCATCTGGGGCTAGCTTCCGTGGTGACATCAATATCCTTCTTGTTGGTGATCCTGGAACGAGCAAATCCCAGTTGCTCCAATACATACACAAGTTATCTCCTCGTGGAATTTACACTAGTGGAAGGGGGAGCTCTGCTGTTGGCTTGACTGCTTATGTTACGAAAGATCCTGAAACAGGGGAAACTGTTTTGGAGAGTGGAGCTCTGGTTCTGAGTGACAGAGGAATCTGCTGCATTGATGAATTTGACAAAATGTCTGACAATGCTAGGAGCATGTTGCATGAGGTGATGGAACAACAAACTGTTTCAATTGCAAAAGCGGGAATTATTGCCTCTCTTAATGCTAGGACTTCCGTATTGGCTTGTGCAAATCCAAGTGGCTCACGTTACAATCCTCGCTTGTCAGTCATAGACAACATACACCTTCCTCCTACCTTATTGTCCAGGTTTGATTTGATTTACCTAATTCTTGACAAGGCTGATGAACAAACAGACAGGCGTCTCGCCAAGCATATTGTTGCTTTACACTTTGAGAATCCTGAGAGTCTAGAGCAAGATGTATTGGACCTTCCTACATTAACTGCATATGTGAGCTATGCCCGAAAGCATATCCATCCCAAGTTATCTGATGAAGCTGCTGAAGAGCTGACACGAGGTTATGTTGAGATGAGGAGGAGAGGAAACTTCCCCGGCAGTAGCAAAAAGGTTATAACAGCCACACCTAGACAGATTGAGAGTTTGATACGCCTTGGTGAAGCCCTGGCCCGTATTCGTTTCTCAGAATGGGTTGAAAAGCGAGACGTAATGGAGGCATTTCGACTTCTGGAAGTTGCATTGCAACAGTCAGCCACAGATCACTCCACCGGAACGATTGACATGGATCTCATTACCACTGGAGTGTCAGCAAGCGAAAGGATGAGACGGGAGAGTCTGGTATCAACAACCCGCAACATAATTATGGAGAAGATGCAACTTGGAGGACCCTCAATGCGGTTGCTGGAGTTACTTGAAGAGCTGAAGAAGCAAAGTTCTTGCAGCGAAGCGCACCTTAATGATGTAAGCTCTCACTCATCATTCACCAACTCACACACACCCTTGTTCCAGTACAAGTTTACACTCATGTGTTTGATTATTTGTTTTGTATCAGCTGAGAAATGCACTTGCCACTCTTGCTAG | 2568 | 0.4692 | MASDSSPANINGGPSSPDDSYSSPIGNTFSSPGDGTRRRRGRRPSASPAFATPPHPHSRFAASETTPTPSEATPTPSSGRRRRGSRRASVSTPIATPSSTDEAPPSSEGEGDDMDEAPPMFVWGTNISVQDVNAAILRFLRHFREHPSHTEGKYMRAIHRVLEIEGESLDVDAHDVFDYDSDLYTKMVRYPLEVLAIFDIVLMDMVSRINPLFEKHIQARIFNLKTSTSMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAVFRCLVCRHYSDPIVVDRGRINEPTTCGRPECLAKNSMTLIHNRCRFADKQIVRLQETPDDIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHLKKTDKSRMQAEDPMEVENGSGRNEEDTLLGYEDKVAQLKELSKQPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFENPESLEQDVLDLPTLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLGEALARIRFSEWVEKRDVMEAFRLLEVALQQSATDHSTGTIDMDLITTGVSASERMRRESLVSTTRNIIMEKMQLGGPSMRLLELLEELKKQSSCSEAHLNDVSSHSSFTNSHTPLFQYKFTLMCLIICFVSAEKCTCHSC* | 856 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0018 | 855 | ProSiteProfiles | MCM family domain profile. | 430 | 636 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | FunFam | DNA helicase | 412 | 749 | - | - | |
| Vvi3g0018 | 855 | MobiDBLite | consensus disorder prediction | 59 | 79 | - | - | |
| Vvi3g0018 | 855 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 133 | 802 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | Gene3D | - | 230 | 369 | IPR012340 | - | |
| Vvi3g0018 | 855 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Vvi3g0018 | 855 | SMART | mcm | 226 | 744 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 471 | 486 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 583 | 595 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 531 | 545 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 559 | 572 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 610 | 618 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | Gene3D | - | 257 | 309 | - | - | |
| Vvi3g0018 | 855 | MobiDBLite | consensus disorder prediction | 89 | 105 | - | - | |
| Vvi3g0018 | 855 | SMART | AAA_5 | 472 | 622 | IPR003593 | GO:0016887 | |
| Vvi3g0018 | 855 | ProSitePatterns | MCM family signature. | 539 | 547 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vvi3g0018 | 855 | FunFam | DNA helicase | 257 | 309 | - | - | |
| Vvi3g0018 | 855 | Pfam | MCM OB domain | 230 | 359 | IPR033762 | - | |
| Vvi3g0018 | 855 | CDD | MCM4 | 433 | 742 | - | - | |
| Vvi3g0018 | 855 | SUPERFAMILY | Nucleic acid-binding proteins | 138 | 380 | IPR012340 | - | |
| Vvi3g0018 | 855 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 441 | 757 | IPR027417 | - | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 252 | 265 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 303 | 315 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 592 | 609 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 446 | 457 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g0018 | 855 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 744 | 753 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g0018 | 855 | Pfam | MCM P-loop domain | 418 | 640 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g0018 | 855 | Gene3D | - | 414 | 749 | IPR027417 | - | |
| Vvi3g0018 | 855 | MobiDBLite | consensus disorder prediction | 389 | 408 | - | - | |
| Vvi3g0018 | 855 | Pfam | MCM AAA-lid domain | 656 | 742 | IPR041562 | - | |
| Vvi3g0018 | 855 | Gene3D | - | 126 | 224 | - | - | |
| Vvi3g0018 | 855 | MobiDBLite | consensus disorder prediction | 1 | 119 | - | - | |
| Vvi3g0018 | 855 | Pfam | MCM N-terminal domain | 135 | 226 | IPR027925 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g0018 | Vvi-Chr3 | 277519 | 284427 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0018 | 1 | 817 | Core DNA Replication Machinery Family | AT2G16440 | 75.572 | 0.0 | 1246 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0018 | K02212 | - | vvi:100262415 | 1562.36 |