Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0017 ATGGGGGACGGCGGTGGTGGTCGCGGCGGTTGCTGTCCACCGATGGATTTGTTCCGGTCGGAGCCGATGCAACTTGTTCAACTCATCATTCCTATTGAGTCCGCTCACCACACCATCTCCTACCTTGGAGACCTCGGTCTCATCCAATTCAAAGACCTGAATGTGGAGAAGAGCCCATTTCAGCGCACTTATGCTGCTCAGATAAAAAAATGTGCAGAGATGGCACGGAAGTTACGTTTTTTCAAGGAGCAAATGTCTAAAGCTGGATTATCACCTTCAGCAAAGATTATGATGCGGGGTGATATTGATATGGATGACTTAGAGGTAAAACTTGGAGAGCTTGAAGCAGAGCTGGTTGAAATAAATGCAAATGGCGAAAAGTTGCAACGTGCTTATAGTGAGCTTGCAGAGTATAAGCTTGTTCTGCACAAGGCTGGTGAGTTTTTTTATTCCATTCGAAGCAGTGCTACAGCTCAGCAGAGAGAAATTGAAGCACATTCTATTAGTGAAGAATCAGTAGACACTCCTTTACTACTGGAGCAAGAAATGTCAACTGATCTGTCAAAGCAAGTAAAGTTGGGGTTTCTTGCTGGCCTTGTTCCTAGGGTGAAATCTATGGCATTTGAAAGGATTCTATTTCGTGCTACCAGGGGTAATGTGTTTCTGCGGCAATCTGCTGTTGAAGATCCTGTGACTGATCCTGTTTCAGGAGAGAAGATCGAGAAAAATGTATTTGTGGTTTTCTACTCTGGAGAAAAAGTGAAGAACAAAATTCTTAAGATATGTGAAGCTTTTGGAGCAAATCGCTACTCTTTTCCTGAAGACCTTGGAAAACAAGCTCAAATGATCACTGAGGTTTCAGGAAGACTGTCAGAGCTAAAGACCACAATAGATGTTGGACTGTTGCACCGTGGCAATTTGTTACAGACCATAGGCGATCAATTTGAGCAGTGGAACCTTTTGGTGAGGAAGGAGAAATCCATCTACCATACTCTAAACATGCTTAGCATTGATGTAACGAAAAAATGTCTTGTAGCAGAGGGGTGGAGTCCCACTTTTGCAACAAAACAGATTCAGGATGCATTGCAGCGGGCAACATTTGACTCCAACTCACAAGTTGGAGCCATTTTCCAGGTTTTGCATACGATAGAGTCGCCACCAACTTATTTCCGCACAAACAAATTTACTTCTGCTTTTCAGGAAATTGTTGATGCATATGGGGTGGCCAAGTATCAAGAGGCAAATCCTGGTGTATTCACTATTGTTACATTTCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGACATGGATTATGCTTGTTACTCGCTACATTGTTTTTTATAATCAGGGAAAAGAAACTCTCCAATCAGAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCTTCTCAGTCCCGTTTGAACTATTTGGTCCCTCGGCCTATGCATGCCGTGATCTTTCTTGCAGGGATGCTTCAACAGCGGGCTTAATTAAGGTGCGTCGCACTTACCCATTTGGTGTGGACCCTGTATGGCATGGTTCCCGCAGCGAACTGCCATTCCTCAACTCTTTGAAGATGAAAATGTCAATCCTTATAGGGGTGGCCCAAATGAATCTTGGAATCATATTGAGCTATTTCAATGCCAAATTCTTTCAGAATAGCCTAAATATATGGTTCCAATTTGTTCCCCAGATGATATTTTTAAACAGTTTGTTTGGTTACCTTTCTGTCCTCATCATTGTGAAATGGTGCACTGGTTCACAAGCTGATTTATATCACATAATGATATACATGTTCTTGAGTCCCACTGATGATCTGGGAGAAAACCAGCTTTTCATTGGTCAGAAAACTGGTCAGATCGTGCTATTATTGCTGGCTCTTGTTGCTGTACCATGGATGCTGCTTCCAAAGCCTTTTCTTATGAAGAAGCAACATGAAGAAAGGCACCAAAGCCAGCTGTACGTACCACTTCAGAGCACAGAGGATTCCTTCCAGTTGGATACAAGTCATGATTCCCATGATCATGAAGAATTTGAATTCGGTGAAGTTTTTGTACATCAACTTATACATACGATTGAATTTGTACTTGGAGCAGTCTCCAATACCGCATCATACCTTCGATTATGGGCCCTCAGTCTTGCTCACTCAGAGTTATCAAGTGTATTCTATGAGAAGGTCCTCCTCCTGGCTTGGGGGTTCAACAATGTAATAATCCTTATAGTTGGCATCATCGTGTTCATTTGCGCCACTATCGGTGTGTTGCTTGTGATGGAAACTCTGAGTGCATTCTTACATGCGTTGCGACTTCACTGGGTGGAGTTCCAGAACAAGTTCTACGAGGGAGATGGTTATAAGTTTTGTCCTTTCTCATTCGCATTGCTCAGTGAGGAAGATGATTGA 2469 0.4261 MGDGGGGRGGCCPPMDLFRSEPMQLVQLIIPIESAHHTISYLGDLGLIQFKDLNVEKSPFQRTYAAQIKKCAEMARKLRFFKEQMSKAGLSPSAKIMMRGDIDMDDLEVKLGELEAELVEINANGEKLQRAYSELAEYKLVLHKAGEFFYSIRSSATAQQREIEAHSISEESVDTPLLLEQEMSTDLSKQVKLGFLAGLVPRVKSMAFERILFRATRGNVFLRQSAVEDPVTDPVSGEKIEKNVFVVFYSGEKVKNKILKICEAFGANRYSFPEDLGKQAQMITEVSGRLSELKTTIDVGLLHRGNLLQTIGDQFEQWNLLVRKEKSIYHTLNMLSIDVTKKCLVAEGWSPTFATKQIQDALQRATFDSNSQVGAIFQVLHTIESPPTYFRTNKFTSAFQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGLCLLLATLFFIIREKKLSNQKLGDITEMTFGGRYVILMMALFSIYTGLIYNEFFSVPFELFGPSAYACRDLSCRDASTAGLIKVRRTYPFGVDPVWHGSRSELPFLNSLKMKMSILIGVAQMNLGIILSYFNAKFFQNSLNIWFQFVPQMIFLNSLFGYLSVLIIVKWCTGSQADLYHIMIYMFLSPTDDLGENQLFIGQKTGQIVLLLLALVAVPWMLLPKPFLMKKQHEERHQSQLYVPLQSTEDSFQLDTSHDSHDHEEFEFGEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGFNNVIILIVGIIVFICATIGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFCPFSFALLSEEDD* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0017 822 Pfam V-type ATPase 116kDa subunit family 41 814 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vvi3g0017 822 PIRSF ATP6V0A1 13 822 IPR026028 GO:0000220|GO:0046961
Vvi3g0017 822 PANTHER VACUOLAR PROTON ATPASES 17 820 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vvi3g0017 822 Coils Coil 104 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0017 Vvi-Chr3 261427 276143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0017 15 822 Primary Pumps ATPases(2) AT4G39080 78.739 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0017 K02154 - vvi:100258865 1596.64