Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0009 ATGTGTGTTTGTATTGTTCAACAGTTCATGGCCAAAGCCCGGGCTCCCAGACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACGTGGCAAAAGTGGAGAAGATCGAATCGGACGGCAGAGGAAGCGTGAAGGTGCACGTGCGATGGTACTACCGTCCGGAGGAGTCGATCGGCGGCAGGCGGCAATTTCACGGATCCAAGGAGGTGTTTCTGTCTGATCACTACGATGTGCAGAGCGCCGATACGATCGAGGGGAAGTGTACGGTTCATACTTTCAAGAGCTACACTAAGCTTGATGCTGTTGGGAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCGTCTACAGGAGCATTCAATCCCGATAGAGTGGCTGTGTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGGTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGAGCACTTTTTCTGCCAAAATTGTTCTTCTGAAGATCAAAAGAAGTTGCTGAATTCTCATAATGCATCAAGACACTCTGACGCAAAGGTGACATTCATGCCATTTGGAAAATGA 675 0.483 MCVCIVQQFMAKARAPRRTLDSYTIKSINKTIRAGDCVLMRPSDSSKPSYVAKVEKIESDGRGSVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHYDVQSADTIEGKCTVHTFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTPEEAKRLEHFFCQNCSSEDQKKLLNSHNASRHSDAKVTFMPFGK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0009 224 Pfam PHD-finger 149 197 IPR019787 -
Vvi3g0009 224 SMART BAH_4 30 145 IPR001025 GO:0003682
Vvi3g0009 224 ProSitePatterns Zinc finger PHD-type signature. 150 195 IPR019786 -
Vvi3g0009 224 CDD BAH_BAHCC1 31 165 - -
Vvi3g0009 224 Gene3D - 7 143 IPR043151 -
Vvi3g0009 224 SMART PHD_3 149 196 IPR001965 -
Vvi3g0009 224 Pfam BAH domain 31 144 IPR001025 GO:0003682
Vvi3g0009 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 211 IPR013083 -
Vvi3g0009 224 FunFam Chromatin remodeling protein EBS 4 141 - -
Vvi3g0009 224 SUPERFAMILY FYVE/PHD zinc finger 138 201 IPR011011 -
Vvi3g0009 224 ProSiteProfiles BAH domain profile. 30 145 IPR001025 GO:0003682
Vvi3g0009 224 ProSiteProfiles Zinc finger PHD-type profile. 147 198 IPR019787 -
Vvi3g0009 224 PANTHER OS08G0421900 PROTEIN 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0009 Vvi-Chr3 120160 122718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0009 50 147 Core DNA Replication Machinery Family AT4G14700 31.000 4.99e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi3g0009 BAH 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0009 - - vvi:100252013 461.455