Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0007 ATGGGGAAGAAGAACAAAACGGAGGGTGGCGGAGCAAGAGATCAACACTGCCCTTCGACTGTGTTCGTCTCCAACTTTCCTTACTCATTCACCAACTCTCAGCTCGAAGAAACATTCAGTGATGTTGGACCGATTAGGCGCTGTTTCATGGTCACACAGAAGGGGTCAACCGAACACCGGGGATTTGGTTTTGTTCAATTTGCTGTTAAAGAAGATGCTAACCGGGCTATTGAACTGAAAAATGGTTCATCTATTGGTGGTCGGAAAATCGGAGTTAAGCTTGCCATGCACCGTACTCCCCTTGAACAGCGTCGATCCAAGGAAAATCAAGATGATATCATTAAGACAAGAACGGAAAAGGATAGTTCTTCTGAGGTGGTCAAGCAGGGACATGCTTCAGACTTACAGGAAATAGAGAAACATGTGGAACTCAGAAAAGCACTGAAACCTTGCACTGATCAAGCTGATAAAGGGAGCTTTTCAGAAAAGCAGAGGGTTGCTCGGACTGTCATATTTGGTGGACTTCTTAATGCTGATATGGCAGAGGTTGTTCACCTCCGAGCCAGAGAGGTTGGCACTGTCTGTTCTGTAACTTATCCTCTTCCAAAAGAAGAGCTTGAACACCATGGTCTCTCTCAAGATGGATGCAAAATCGATGCCTCAGCTGTGCTTTATTCAAGTGTCAAAGAGGCACATGCTTCTGTTGCGATGTTACATCAAAAAGAGATAAAGGGAGGAATTGTTTGGGCACGTCAACTGGGTGGGGAGGGCTCCAAGACTCAAAAATGGAAACTCATAGTTAGAAATCTTCCTTTCAAGGCTAAAGTGACCGAGATAAAAGATATTTTTTCATCTGCTGGGTTTGTATGGGATGCATTTATTCCACAGAATTCTGAGACAGGGTTATCTAGAGGTTTTGCATTTGTTAAGTTCACAAGCAAGCAAGATGCAGAAAATGCAATCCAGAAGTTCAATGGGGAAAAAATTGGTAAAAGACCCATAGCTGTTGACTGGGCTGTTCCAAAGAAAATTTATATCACTGGTGCTAATCCTGTTGTTGCATCAGAAGATGGACAACTGAATGGGAGAGATGGGGAAGGTGATACTGATAGTGATGATTTGGAGGATGACACTACAGATATTGATAATAAAGTACCACACCCTCAAGGGGTTGGTAGTGCTCCAGATGACTCCAATACAACAGAGAAAGAAGTAATGCCTACTGAATTTGATTTTAATGAAGAAGCAGACATTGCAAGGAAGGTTTTAAAGAACTTGATCACATCCTCTGCTAAAGGAACACTTCCTTCTTCCAGTGGTGGACCCACGGACCTAAATTTTGATGAAACCATTGACGTACTGAAAAAAACATCCAATGAATCTGAAAAAGCATCAGATGTAACTGAACCTGAAAACTCTAGCAAAAGCAAATTATTAAATCTTAGACCAATAGAGTCAGAAGATGATTTGCAGAGAACAATTTTCATAAGCAACCTGCCTTTTGATATTGACAAGGAAGAAGTTAAGCAACAATTTTCCAAATTTGGTGAAGTGCAATCCTTTGTCCCTGTTCTCCATCAAGTAACCAAGCGACCAAAAGGAACAGGGTTTCTTAAGTTCAATACAGTAGCTGCAGCTGATGCTGCAGTATCAGCAGCAAACCCCACATCTTCTTTGGGGATTTTCCTGAAGGGCAGGCAATTGACAGCTTTGAAGGCTTTGGACAAGAAATCAGCTCATGATAAGGAATTGAAGAAGAGCAAACCTGAGGAACGTGATCACCGCAATCTTTACCTGGCTAAGGAAGGTCTCATTGTTGAAGGGACTCCAGCTGCTGAAGGTGTTTCAGCTAGTGACATGTCAAAGCGCCATATGTTGGCAAGACAAAAAGATACAAAATTAGAATCTCCAAATTTTCATGTTTCAAGGACTAGACTTATCATATACAATTTGCCCAAGTCAATGACAGAAAAAGAAGTTAAAAAGCTTTGTATAGATGCAGTTACCTCACGTGCTACCAAGCAAAAACCCATGATTAAACAGATAAAGTTTCTGAAGGATATGAAGAAAGGAAAAGTAGTCACAAAGAACCATTCACGAGGAGTTGCTTTCATTGAGTTTACAGAGCATCAACATGCACTTGTAGCCCTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTCCTGAACATCGCCCAATTGTGGAGTTTGCTCTTGATAATATCCAAACATTGAGGCAAAGGAGGGCTAAGCTGGAGGCTTACCAGCAGATTAACCATGGCTATCCAGAGGACTTGCAGCCAAATGATGACCCCAACACACCAGAAGCCAGCCCAAACAAGAAGATGAAATCAAGAAAACGTAAGTCCAGGGATAATGATGGACCATTGAAGACTTCAGAACCCAATGAAGGAGATGAACCAGAAGATAAGGTAATCAAAGGAGCTGTCATTGATCGACATGGAGCTGCAAAGAAACATAAGATTAATCCAGCAAAAGAAAAACAGAAAGACAAACGCAAGAAGCTGAACAATTCCCATGGAATCGGGAAGCCTGATGATGAAAAACCCTTAAAAGCAGAAAGCACAATCAGCAAAGCCCGCAATTCAAAGTCTTCAGAGGAATCAAATATGCTACCAAAAAAGAGGAAGCTGCAAGAGCATATAGCAGTACAAGAAGGGAAAAGCCCGAAACAAAAAACAAGGACCCGAAGGAGTAAAGATCCATCAGGGCAGGTCATACTTGATAAGTTGGACATGCTGGTGGAACAATATAGAGCTAAATTTTCACAGCAGACTGATGACAAAACTGATGGCCAAAAACAAGGTTCCAGACAGCTTAAGAGATGGTTCCAGTCATAA 2862 0.4172 MGKKNKTEGGGARDQHCPSTVFVSNFPYSFTNSQLEETFSDVGPIRRCFMVTQKGSTEHRGFGFVQFAVKEDANRAIELKNGSSIGGRKIGVKLAMHRTPLEQRRSKENQDDIIKTRTEKDSSSEVVKQGHASDLQEIEKHVELRKALKPCTDQADKGSFSEKQRVARTVIFGGLLNADMAEVVHLRAREVGTVCSVTYPLPKEELEHHGLSQDGCKIDASAVLYSSVKEAHASVAMLHQKEIKGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKVTEIKDIFSSAGFVWDAFIPQNSETGLSRGFAFVKFTSKQDAENAIQKFNGEKIGKRPIAVDWAVPKKIYITGANPVVASEDGQLNGRDGEGDTDSDDLEDDTTDIDNKVPHPQGVGSAPDDSNTTEKEVMPTEFDFNEEADIARKVLKNLITSSAKGTLPSSSGGPTDLNFDETIDVLKKTSNESEKASDVTEPENSSKSKLLNLRPIESEDDLQRTIFISNLPFDIDKEEVKQQFSKFGEVQSFVPVLHQVTKRPKGTGFLKFNTVAAADAAVSAANPTSSLGIFLKGRQLTALKALDKKSAHDKELKKSKPEERDHRNLYLAKEGLIVEGTPAAEGVSASDMSKRHMLARQKDTKLESPNFHVSRTRLIIYNLPKSMTEKEVKKLCIDAVTSRATKQKPMIKQIKFLKDMKKGKVVTKNHSRGVAFIEFTEHQHALVALRVLNNNPETFGPEHRPIVEFALDNIQTLRQRRAKLEAYQQINHGYPEDLQPNDDPNTPEASPNKKMKSRKRKSRDNDGPLKTSEPNEGDEPEDKVIKGAVIDRHGAAKKHKINPAKEKQKDKRKKLNNSHGIGKPDDEKPLKAESTISKARNSKSSEESNMLPKKRKLQEHIAVQEGKSPKQKTRTRRSKDPSGQVILDKLDMLVEQYRAKFSQQTDDKTDGQKQGSRQLKRWFQS* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0007 953 SUPERFAMILY RNA-binding domain, RBD 259 355 IPR035979 GO:0003676
Vvi3g0007 953 Gene3D - 2 111 IPR012677 -
Vvi3g0007 953 Gene3D - 448 589 IPR012677 -
Vvi3g0007 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 492 591 IPR000504 GO:0003723
Vvi3g0007 953 MobiDBLite consensus disorder prediction 789 862 - -
Vvi3g0007 953 FunFam RNA-binding motif protein 28 643 738 - -
Vvi3g0007 953 MobiDBLite consensus disorder prediction 875 912 - -
Vvi3g0007 953 SUPERFAMILY RNA-binding domain, RBD 636 745 IPR035979 GO:0003676
Vvi3g0007 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 341 IPR000504 GO:0003723
Vvi3g0007 953 MobiDBLite consensus disorder prediction 760 915 - -
Vvi3g0007 953 MobiDBLite consensus disorder prediction 457 476 - -
Vvi3g0007 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 644 757 IPR000504 GO:0003723
Vvi3g0007 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 334 IPR000504 GO:0003723
Vvi3g0007 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 494 554 IPR000504 GO:0003723
Vvi3g0007 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Vvi3g0007 953 SUPERFAMILY RNA-binding domain, RBD 19 249 IPR035979 GO:0003676
Vvi3g0007 953 CDD RRM4_RBM28_like 644 741 - -
Vvi3g0007 953 PANTHER RNA-BINDING MOTIF PROTEIN 14B 16 953 - -
Vvi3g0007 953 MobiDBLite consensus disorder prediction 928 953 - -
Vvi3g0007 953 MobiDBLite consensus disorder prediction 103 132 - -
Vvi3g0007 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Vvi3g0007 953 MobiDBLite consensus disorder prediction 929 943 - -
Vvi3g0007 953 CDD RRM2_RBM28_like 264 340 - -
Vvi3g0007 953 Gene3D - 250 377 IPR012677 -
Vvi3g0007 953 MobiDBLite consensus disorder prediction 355 412 - -
Vvi3g0007 953 SUPERFAMILY RNA-binding domain, RBD 492 663 IPR035979 GO:0003676
Vvi3g0007 953 Coils Coil 735 755 - -
Vvi3g0007 953 Gene3D - 643 738 IPR012677 -
Vvi3g0007 953 SMART rrm1_1 20 93 IPR000504 GO:0003723
Vvi3g0007 953 SMART rrm1_1 645 736 IPR000504 GO:0003723
Vvi3g0007 953 SMART rrm1_1 264 337 IPR000504 GO:0003723
Vvi3g0007 953 SMART rrm1_1 493 571 IPR000504 GO:0003723
Vvi3g0007 953 CDD RRM1_RBM28_like 20 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0007 Vvi-Chr3 78495 93933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0007 21 339 Eukaryotic Initiation Factors Gene Family AT2G36660 23.529 1.12e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0007 K14573 - vvi:100257200 1838.16