Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0004 ATGGCTACATATTACCCTAGTTCAAATAATCAAAGAGATGCTGCCCCTATGCATTATTTAAGGGAACCTTTGCCCACATCATATTCGGAAGTTCCTGTTCTTCCCACTAATATGATGTATATGAGCTACCCATCGTCTTCTGGGTCATACTCGGACACATTGGCTGGGAATGCCCAGCAGCACAACCACAACTGCATTGAAATTCCATCTGTGGCAGCTTCCGACTCCACCCAACCGCAGCATGAAATCTTGTCAAGCCTTAGTGGGTCACATATAGTGGAACATGATTTCAGCGCATGGAGGGATGGTAAAAATGAGATGCTAGTTATGAACTCACTGGGTGGCCCTGCAAGCCTTCTTCACACCGGGCAGCATTTGCAGGCTCAGGGCTTGTCCCTTAGTCTTGGCACACAAATCCCCTCAGGAATCCAAATTCCTTCCATTCAATATCGGAATCCCAATCAGGGTTTCACCTCATTCTTGAGTCCTACTTCATCAGTGTCGGGTGAAGGTGGCGGCAGGAATGGCTCTTCTAGGGATGAACAGTTGAGAAATGCTGAATTTTTGCCACCAGGTGTTCTTGGAGCTAATCAAGATTCAATTAAAGTGGATCCATCTTCATATGGAATGTCAAGTATTGCGAGGACCATTCCCCATTCCAAGTACTTAAAGGCAGCCCAGCAACTGCTTGATGAAGTTGTTAATGTTCGAAAAGCTTTGAAGCAGCCTGATTCTGAGAAAAACCAAAACATACATGAGCTTTGGAAGGGTTCCAAAGAGGCCGATGTGGGTTTGAAGAATGGAACTGGTATGACTCCTGCAGCTTCAAACCCTCAAGAGCCTGTCAGCAATTCCTCAAGTGAGCTTTCTCCTGCTGAAAGACAGGATTTACAAAACAAGTTGACAAAGCTTTTGGCCATGTTAGATGAGGTTGATAGAAGGTACAAACAGTATTATCACCAGATGCAGATTGTGGTATCATCATTTGATGTGATAGCAGGATCTGGGGCTGCAAAACCCTACACAGCACTTGCCCTCCAGACAATTTCTCGCCACTTCCGCTGCTTGCGTGATGCAATCACTGGCCAGATTCGAGCAACGCGAAGAAGTCTTGGGGAGCAAGATACTTCAGGAAACGGCAAAGGGGTTGGAATATCTCGCCTGCGATATGTGGACCAGCAGCTCAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATGCAACAACATGCCTGGAGGCCACAGAGGGGGCTGCCTGAAAGCTCTGTTTCTATTCTTCGTGCTTGGCTATTTGAGCACTTCCTTCATCCCTACCCAAAAGATTCTGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACCAGGAGTCAGGTCTCAAACTGGTTTATAAATGCGCGGGTGCGTCTCTGGAAGCCCATGGTGGAAGAGATGTACAAAGAAGAGATAGGTGATGCAGATATGGACTCTAATTCTTCGTCCGAAAATGCACCCAAAGCGACAAAAAGTGATATCAGGGCATCTGAGGAAAGAGGTGATGATTTTCAGCCAAGCACAACTTCCACGGTAACCGAGAGATGCAGCACTGGCCGATTTCTTGACTCCAAATCCAGTAATGCTCCCGATGTAGAGATGGGGGGACCAACTGCAGGAGCCAGTTTCAGAAATGGGGAACGGGGTGAAACCCAAACTGAATATGGAATAGTGAAATTAAGCGGGGACCAAAGGCCTAGCGTGGAGGAATGCAGCAGCCTCTTCCCAGATGGCATTGTTCAGTCTGATGGGGGCAGCGATAGGTTCATGGCAGCCGCTGCTGCAGCATACCACATGTCAGAGTTGGGGAGGTTCGGAAGTGGAACTGGGGTATCTCTTACATTGGGGTTGCAGCATTGCGAGGGAGGCAGCTTACCCATTTCCAATGGAGGTCATCACAGTTTTGTGGGTATGCGGGGGGCCGATATGTACAACCCAGCAGCTTCTTCAGTGGGGACTGACACGGCCGATTTCGACTGCATGGATCCTGGCAACCGGCAGCACAGATTCAGCTCCTCCCATCTATTACATGATTTTGTAGCCTGA 2076 0.4836 MATYYPSSNNQRDAAPMHYLREPLPTSYSEVPVLPTNMMYMSYPSSSGSYSDTLAGNAQQHNHNCIEIPSVAASDSTQPQHEILSSLSGSHIVEHDFSAWRDGKNEMLVMNSLGGPASLLHTGQHLQAQGLSLSLGTQIPSGIQIPSIQYRNPNQGFTSFLSPTSSVSGEGGGRNGSSRDEQLRNAEFLPPGVLGANQDSIKVDPSSYGMSSIARTIPHSKYLKAAQQLLDEVVNVRKALKQPDSEKNQNIHELWKGSKEADVGLKNGTGMTPAASNPQEPVSNSSSELSPAERQDLQNKLTKLLAMLDEVDRRYKQYYHQMQIVVSSFDVIAGSGAAKPYTALALQTISRHFRCLRDAITGQIRATRRSLGEQDTSGNGKGVGISRLRYVDQQLRQQRALQQLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGDADMDSNSSSENAPKATKSDIRASEERGDDFQPSTTSTVTERCSTGRFLDSKSSNAPDVEMGGPTAGASFRNGERGETQTEYGIVKLSGDQRPSVEECSSLFPDGIVQSDGGSDRFMAAAAAAYHMSELGRFGSGTGVSLTLGLQHCEGGSLPISNGGHHSFVGMRGADMYNPAASSVGTDTADFDCMDPGNRQHRFSSSHLLHDFVA* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0004 691 MobiDBLite consensus disorder prediction 513 535 - -
Vvi3g0004 691 Coils Coil 294 314 - -
Vvi3g0004 691 MobiDBLite consensus disorder prediction 482 561 - -
Vvi3g0004 691 Pfam Homeobox KN domain 429 468 IPR008422 GO:0003677|GO:0006355
Vvi3g0004 691 FunFam BEL1-like homeodomain protein 4 415 477 - -
Vvi3g0004 691 Pfam Associated with HOX 217 361 IPR006563 -
Vvi3g0004 691 MobiDBLite consensus disorder prediction 270 294 - -
Vvi3g0004 691 MobiDBLite consensus disorder prediction 159 179 - -
Vvi3g0004 691 SMART prehox3 211 362 IPR006563 -
Vvi3g0004 691 SUPERFAMILY Homeodomain-like 413 479 IPR009057 -
Vvi3g0004 691 MobiDBLite consensus disorder prediction 262 294 - -
Vvi3g0004 691 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 495 - -
Vvi3g0004 691 Gene3D - 407 486 - -
Vvi3g0004 691 MobiDBLite consensus disorder prediction 159 180 - -
Vvi3g0004 691 SMART HOX_1 412 476 IPR001356 GO:0003677
Vvi3g0004 691 CDD homeodomain 412 473 IPR001356 GO:0003677
Vvi3g0004 691 ProSiteProfiles 'Homeobox' domain profile. 409 472 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0004 Vvi-Chr3 41298 46508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0004 27 691 Homeobox Transcription Factor Family AT4G34610 43.485 1.77e-147 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi3g0004 POX 1.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0004 - - vvi:100262246 1321.99