Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0003 ATGGAGCCAACAAATGGAGGTTTGTCAAGCAATTATGGTAACCCAATTCCAGTAAACTTTGAGCCCTACAAGCTGACTGAGTTCAACTCCACCAAACATAAAAGGATCTGGACATTTGAAGAAAATATGCATTCTGAACCAAAACAGAAGCGGCAGAAGGCTGGCCCAAATGTTGTTGATTATTCTGATCCATTTGCCATTCCCAATTTGCTGGAAGGTTTAGATGCCGGAAGATTCGGAAGTGTGACTAAAGAAATAGAGGCCCTATGTGCTCGAAGGATGCAAATGCTTCAACCTTATTATGTAATGTATCCTTCACTTTCATATATGTGCACGGATTTGGGAAAGAAACAGGGCAAAAAGGCTTCAAAGTTGGTGAATAGAGAGGCCTCTCATTTGGCTCACGAAGATGTTATAGATCTGGAGGATGATCACGTTGTTGATGATGCTCTAACAGCAACAGCTGTAGAAGATGCAACATTACCTGTTGTGATTATCGATTCAGATGATGAAGACTGTGGAGATCAGAAGGTCTCTCATCCACCACAGGAAACAGCCTGGCCTTCTTTCTCATATCAGGAAGTTGTCTTGAGAAAACCTTCTGTTGGACTTCTTGCAAATAATCCTGTGGTTAGGGATTATGTTGGGAGTATAGCCCCAAAAGTAGAAGAGGGAAGTCTGATGGGTGCTACTGAAATCAGAAAAGATAAGGATGTGTATATTGGTGTGGGAGAGAAAAGTTTGGTGGCTAACCTTGAAATGAAAAAAGTGCAAGGTGAATATGTTGGTGTGGAAGATGATATGGAAACCAATGAAGGCAATCTTCGAGCTAAGACTGAAGATGATGGTTTGGCTGATATGTGGCAAGAGTTTGATTTGGCCTTACAATCTTCAAAGGATGTTGCTGTGGATCCTGGAGAAGACGAAAAAGAAAGCAAAGAAGAATGTGAGCATTCTTTTGTTCTGAAGGATGATATTGGTTCTGTTTGTCGCATCTGTGGAGTTGTCAACAAAAGTATTGAAACCATAATTGAGTACCAGTATACTAAGGTGAAAAGATCCAGAACTTACATGTATGAACCTCGAAACACCAAAGATAGAGAGCCAACTGATGACCCTTCAGATGGACTTGGATTTTCTGAGCATAATTTAACTGTAACTGAAATCCACGCACATCCGAGGCACAGCATGCAAATGAAGCCCCATCAAGTGGAGGGCTTCAATTTTCTGGTAAGCAACTTGGTGGCAGAAAATCCTGGGGGTTGCATTTTGGCTCATGCTCCAGGGTCTGGGAAAACTTTCATGATCATTAGTTTCATGCAAAGTTTCCTAGCCAAGTATCCCCAAGCCAGACCTCTTGTTGTACTTCCCAAGGGTATCTTGGCAACATGGAAAAAGGAATTTCTGACTTGGCAAGTTGAGGATATTCCACTGTATGACTTCTACTCTGTGAAAGCAGATAGCCGGCCTCAGCAGCTAGAGGTGTTGAAACAATGGGTGGCAGAGAAGAGCATCCTGTTTTTAGGGTACAAGCAGTTCTCCTCAATTGTTTGTGGTGATGGAGCTTCCAAGGCAACAATTGCCTGCCAAGAAATACTGTTAAAGGCCCCTCAGATTCTTATTTTGGATGAGGGTCACACTCCAAGGAATGAGAACACTGATGTTCTGTACTCCCTTGCAAAAGTTCAAACTCCTCGGAAAGTTGTACTCTCAGGCACCCTTTATCAGAACCATGTGAAAGAGGTATTTAATATTTTGAATCTTGTTCGTCCAAAGTTCCTGAAGTTGGAAAGTTCCCGTGCTGTTGTTAAGCGTATAATGAGCAAGGTGGACATCATGGGTGTAAGGAAGCAGTTGAAATCCAATGCTGCAGATGCTTTTTACGACCTGGTGGAAAACACACTCCAGAAGGATGATAATTTCAGGAGGAAAATAACTGTGATACAAGATCTCCGTGAGATGACCAGCAAAGTTCTGCACTACTATAAAGGAGATTTCCTGGATGAGCTACCTGGACTGGTTGATTTCACTGTACTTCTCAATCTCAGTGCCAGACAGAAGAAGGAGGTTGGAAATTTGAACAAGTTTGAGAGGAAGTTCAAGAAAAATTCTGTTGGGAGTGCTGTTTATTTACACCCACAGTTGAAGTATTTTGCAGAAAAACTTGCTGCAAATGAATCTAAGACGGATGAGATGACTTGTCAGAAAAAGATGGATGAGATCTTAGAGCAATTGGATGTAAGAGATGGAGTGAAAGCAAAGTTCTTCCTTAATGTGTTGGCCTTGTGTCAATCTTCAGGGGAGAAATTGTTGGTTTTCAGTCAGTACCTTCTACCACTGAGATTTTTGGAGAAACTAACCATGAAAGTGAAGGGTTGGAGTCCAGGAAAAGAAATATTTGCCATCTCAGGTGAATCTAGTTCAGAGCAACGGGAATGGTCAATGGAACGCTTTAACACCTCTCCTGATGCAAGAGTTTTCTTTGGCTCAATTAAAGCATGTGGGGAAGGAATATCATTGGTTGGGGCATCTAGGGTTCTTATTTTGGATGTCCATCTAAACCCATCTGTGACCCGCCAGGCAATAGGCAGGGCTTTCCGTCCTGGACAAAAGAAGAAAGTGCATGTGTACAAGTTGGTTGCTGCTGATTCACCGGAAGAGGAAGACCACAATTCTTGCTTCAAGAAAGAATTGATTTCAAAGATGTGGTTCGAGTGGAATGAGTACTGTGGTCACCACGAGTTTGAGGCAGAAACTGTGGATGTCAGTGACTCTGGGGATCTCTTCCTGGAAAGTCCATTGCTGAGGGAAGATATAACAGTTTTGTACAGAAGGTGA 2838 0.4235 MEPTNGGLSSNYGNPIPVNFEPYKLTEFNSTKHKRIWTFEENMHSEPKQKRQKAGPNVVDYSDPFAIPNLLEGLDAGRFGSVTKEIEALCARRMQMLQPYYVMYPSLSYMCTDLGKKQGKKASKLVNREASHLAHEDVIDLEDDHVVDDALTATAVEDATLPVVIIDSDDEDCGDQKVSHPPQETAWPSFSYQEVVLRKPSVGLLANNPVVRDYVGSIAPKVEEGSLMGATEIRKDKDVYIGVGEKSLVANLEMKKVQGEYVGVEDDMETNEGNLRAKTEDDGLADMWQEFDLALQSSKDVAVDPGEDEKESKEECEHSFVLKDDIGSVCRICGVVNKSIETIIEYQYTKVKRSRTYMYEPRNTKDREPTDDPSDGLGFSEHNLTVTEIHAHPRHSMQMKPHQVEGFNFLVSNLVAENPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQWVAEKSILFLGYKQFSSIVCGDGASKATIACQEILLKAPQILILDEGHTPRNENTDVLYSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAVVKRIMSKVDIMGVRKQLKSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVGSAVYLHPQLKYFAEKLAANESKTDEMTCQKKMDEILEQLDVRDGVKAKFFLNVLALCQSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFNTSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKMWFEWNEYCGHHEFEAETVDVSDSGDLFLESPLLREDITVLYRR* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0003 945 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 44 944 IPR044567 GO:0080188
Vvi3g0003 945 Gene3D - 671 929 IPR027417 -
Vvi3g0003 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 608 IPR027417 -
Vvi3g0003 945 SMART ultradead3 395 609 IPR014001 -
Vvi3g0003 945 Pfam SNF2-related domain 417 618 IPR000330 GO:0005524|GO:0140658
Vvi3g0003 945 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 413 592 IPR014001 -
Vvi3g0003 945 SMART helicmild6 780 869 IPR001650 -
Vvi3g0003 945 CDD SF2_C_SNF 752 880 - -
Vvi3g0003 945 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 755 923 IPR001650 -
Vvi3g0003 945 Gene3D - 373 633 IPR038718 -
Vvi3g0003 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 910 IPR027417 -
Vvi3g0003 945 Pfam Helicase conserved C-terminal domain 759 868 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0003 Vvi-Chr3 26344 40225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0003 766 887 RAD5 or RAD16-like Gene Family AT5G43530 36.066 8.01e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi3g0003 SNF2_N 4.4e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0003 K10875 - vvi:100248561 1880.53