Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0001 ATGAAACGATCAATTGAGGAAGACATCAGCACCACCATCGTCTCCGCCGCCACCAACATGAAGAAGCCCGTCTTCTTGACCAAAGCCCAGCGCGAACAGTTGGCCCTTCAACGTCGCCACGAAGAAATCGCCGAACAGAAGCGCCGTGCTGAACAACAGCTACTCCAAGCCCGCTCCTCCTCCGGCAACCACTCCTCCCACGCTGCCTCCACCAACAAACCCTCAGATCCCTCTCTGGACAGCCGCCATCACCGCTCTTCCAGAGACCGAGATCGCGATCGCGATCGCGATCGCGATCGCGACCGGGACCGTGATTCAGAGCGGAGGAACCGCGATCGGGAACGCGAGGAAGAGGCCAAGGTTCGGGAGCGAGCTCGCTCAGAGAAACTAGCTGACCGGGAGCGAGAGAAAGAGCTTGAATCCATCAAAGAACAGTACCTCGGATCCAAGAAACCCAAGAAAAGGGTTATTAAACCCAGCGAGAAGTTCCGATTTTCCTTCGATTGGGAGAACACTGAGGACACCTCCCGCGACATGAATTCACTCTACCAAAACCCTCACGAGGCTCAGCTCTTGTTCGGAAGAGGATTTCGTGCTGGCATGGATCGTCGTGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAAGAGATGAGAGAGGAGATCCGCAAGAAAGAGGGTGTTGAGGAGAGACCGGAGGAGGCTGCAGCCCAGAGGCAGAAGGAACAAGCCGCCGAATTGTATGATACTTTTGATATGAGAGTGGATCGCCACTGGACCGAAAAGAAGCTAGAGGAAATGACTGAGAGGGACTGGAGAATTTTCAGAGAGGATTTCAATATATCTTACAAGGGCTCTAAGATTCCTCGCCCTATGAGGAGTTGGGTAGAGAGCAAATTGAGTACTGAGCTGCTCAAGGCCGTGGAGAGGGCTGGCTATAAGACGCCTTCCCCTATTCAGATGGCAGCCATTCCTCTCGGACTGCAACAGCGCGATGTGATTGGGATTGCTGAGACTGGTTCTGGTAAGACTGCTGCATTTGTGCTTCCCATGCTGACTTACATTTCTAGACTCCCTCCCATGAGCGAGGAGAATGAAGCTGAAGGGCCTTATGCTGTTGTAATGGCCCCTACCCGTGAACTTGCGCAGCAGATTGAGGATGAGACTGTGAAGTTTGCCCATTATTTGGGTATCAAAGTGGTTTCTATTGTCGGTGGTCAGTCGATCGAAGAGCAAGGGTTTAGGATCAGGCAAGGGTGTGAGGTTGTAATTGCGACACCTGGGCGGCTAATTGATTGCCTGGAGAGGCGTTATGCTGTTTTGAACCAATGCAATTATGTTGTTCTGGACGAGGCTGATCGCATGATTGACATGGGTTTTGAGCCACAAGTGGTGGGTGTTTTGGATGCTATGCCTTCAAGCAATTTGAAGCCAGAGAATGAAGATGAAGAGCTTGATGAGAAAAAAATATACCGGACCACTTATATGTTCAGCGCTACAATGCCTCCAGCTGTGGAACGGCTTGCAAGGAAGTACTTAAGAAATCCTGTTGTAGTCACAATTGGCACTGCTGGAAAGGCCACTGACCTGATCACTCAGCATGTTATTATGATGAAGGAATCAGAGAAAATGTTTAAGTTGCAGAAGCTGCTGGATGAACTCGGAGATAAGACTGCAATTGTGTTTATCAACACTAAAAAGTCTGCAGATAATCTTGCCAAGGGTTTGGATAAGGCAGGCTACCGAGTGACAACTTTGCATGGTGGAAAGTCACAAGAGCAGAGGGAAATTAGCCTTGAAGGTTTTAGGACCAAGAGATATAATGTTTTGGTTGCAACAGATGTGGCTGGGCGTGGGATTGATATCCCTGATGTCGCACATGTTATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGGACAGGCCGTGCAGGGAAGACAGGGGTGGCCACAACATTCTTGACTCTGCATGATTCTGATGTCTTCTATGACCTCAAGCAGATGCTTATTCAGAATAACAGTCCTGTGCCTCCAGAACTAGCAAGACATGAGGCTTCAAAATTCAAGCCAGGAGCAATTCCTGACAGACCACCTAGACGCAATGACACAGTTTTTGCACACTGA 2139 0.497 MKRSIEEDISTTIVSAATNMKKPVFLTKAQREQLALQRRHEEIAEQKRRAEQQLLQARSSSGNHSSHAASTNKPSDPSLDSRHHRSSRDRDRDRDRDRDRDRDRDSERRNRDREREEEAKVRERARSEKLADREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREEIRKKEGVEERPEEAAAQRQKEQAAELYDTFDMRVDRHWTEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQNNSPVPPELARHEASKFKPGAIPDRPPRRNDTVFAH* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0001 712 MobiDBLite consensus disorder prediction 687 712 - -
Vvi3g0001 712 Coils Coil 204 230 - -
Vvi3g0001 712 Gene3D - 523 709 IPR027417 -
Vvi3g0001 712 Pfam Helicase conserved C-terminal domain 543 650 IPR001650 -
Vvi3g0001 712 Gene3D - 253 522 IPR027417 -
Vvi3g0001 712 Coils Coil 104 124 - -
Vvi3g0001 712 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 292 320 IPR014014 GO:0003724
Vvi3g0001 712 MobiDBLite consensus disorder prediction 38 52 - -
Vvi3g0001 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 689 IPR001650 -
Vvi3g0001 712 MobiDBLite consensus disorder prediction 680 712 - -
Vvi3g0001 712 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 229 689 - -
Vvi3g0001 712 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 447 455 IPR000629 -
Vvi3g0001 712 SMART helicmild6 569 650 IPR001650 -
Vvi3g0001 712 MobiDBLite consensus disorder prediction 77 151 - -
Vvi3g0001 712 Coils Coil 26 60 - -
Vvi3g0001 712 CDD SF2_C_DEAD 530 659 - -
Vvi3g0001 712 CDD DEADc_DDX23 303 519 - -
Vvi3g0001 712 MobiDBLite consensus disorder prediction 206 234 - -
Vvi3g0001 712 MobiDBLite consensus disorder prediction 38 154 - -
Vvi3g0001 712 SMART ultradead3 311 533 IPR014001 -
Vvi3g0001 712 Pfam DEAD/DEAH box helicase 317 507 IPR011545 GO:0003676|GO:0005524
Vvi3g0001 712 MobiDBLite consensus disorder prediction 53 76 - -
Vvi3g0001 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 323 518 IPR014001 -
Vvi3g0001 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 671 IPR027417 -
Vvi3g0001 712 FunFam probable ATP-dependent RNA helicase DDX23 253 522 - -
Vvi3g0001 712 FunFam probable ATP-dependent RNA helicase DDX23 523 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0001 Vvi-Chr3 3056 5194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0001 299 699 Eukaryotic Initiation Factors Gene Family AT3G13920 33.831 7.34e-61 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0001 K12858 - vvi:100241918 1271.91