Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1169 ATGCCAACCCTCTTGTTGCTTTGCATGCTTGTCTTGCTCAACTGCCTTGCTACTGAATCCGCACCTGGGTATCTATATCATATCTGTCCCAACACGACTACTTTCAACCCAAATAGCAGCTATGAAACCAATCTCAATTTCGCTCTCTCTTCTCTTTCCTCCAACGCCACCCGTGACACCGGATTCTACAACGTCACCGCCGGCCGAACACCTCCGGACGTTGCCTACGGCCTCTTTCTCTGCCGAGGTGATGTTACCTCCCAAGTCTGTCAAGATTGCGTGGCGACTGCCGTTAATGAGACAGTCAGACAGCGGTGTCGCGGCTTTAAACAGGCCATTATTTGGTATGATGAGTGCATGTTGCGTTACTCAAATGAGTCTTTCTTCTCCCAAGTTTCTGAATCGCCCAGAGTTTCCATGTGGAATACGCAGAATATCACAGAGCCAGACCAGTTTAATCAGGTGCTGGGAGACACCTTAGACTCCATAAGGACTCAAGCTGTGAATGATCAATCTGGCAAGAAGTTTGCCACTAAAGAAGAAAATTTCACAGGATTTCAAAGGGTGTACAGCCTAGTGCAGTGCACACCTGATTTATCTCCAGACCAATGCGATCGGTGTCTCATAGGAACCATTGCAATCCTCCCTGATTGCTGCGGTGGCAAACAGGGGGCAAGGGTCCTGTTTCCAAGCTGCAACGTTCGGTATGAGTTGTACCCATTCTACCAGAGTGTGGCCGCACCACCATCTCCTCCGCCGGCTCGACCTTCAGAACCAAGCACTGAAGGAAAAGGTGGAATATCTTCAAAAACAATTGTCATCATAGTTGTTCCAACGTTTGTCTCTGTGGTGATCTTCTCTATTCTATGCTACTGTTTCATACGTAGGTGTGCTAAGAAGAGATACGATACTTTAGAAGCGGAAAATGTTGAGTTCAATATCACCACCGAGCAGTCATTGCAATTTGATTTGGCTACAATTCAAGCTGCTACAAATAACTTCTCTGACCATAACAAGATTGGTGAGGGGGGATTTGGTGCCGTATACAAGGGTACACTTTCTAGTGGACAAGAAATTGCTATAAAGAGGCTATCTAAAAGCTCTGGGCAAGGTGCAGTAGAATTCAAAAATGAGGTTGTATTGGTAGCCAAGCTTCAACACAGAAATCTAGTGAGGTTATTGGGATTTTGCTTGGAAGGGGAAGAGAAGATACTTGTCTATGAATATGTGCCCAACAAAAGCCTTGACTACTTCCTGTTTGATCCTGATAAACGAGGACAATTGGATTGGTCAAGACGGTACAAGATTATTGGAGGAATAGCCCGAGGGATTCTTTATCTTCATGAAGATTCCAGGCTCAGAGTTATACATCGTGATCTAAAAGCCAGCAATGTTTTGCTAGATGGTGATATGAACCCTAAAATTTCAGATTTTGGCATGGCAAGGATTTTTGGTGTAGATCAAACTCAAGGAAATACAAACAGAGTTGTTGGCACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGACGCTTCTCTGTCAAGTCCGATGTCTATAGTTTTGGTGTCTTAGTTTTAGAGATTATAAGTGGCAAGAGGAGTAATTGTTTCCACGAATCAGACCAAGCAGAAGACCTTCTGAGCTATGCTTGGAAACTTTGGAGGAATGACACACCCTTGGAATTTATGGGCCCAACGACAAGGAATTCTTTCTCAAAAAATGAAGTCATTAGGTGCATCCATATGGGGTTATTATGTGTTCAAGAAGATCCGGATGACAGACCATCCATGGCATCGGTAGTTCTCATGCTCAGCAGTTACTCTGTTACTCTACCATTGCCTCAACAGCCAGCCTCCTTTAGTCGCACGGGAGCACTGTCAGACTTTCCAATAATGGCACTGGAATCGGACCAATCTGCAAGTAAGTCAATGACATGGTCTGTGAATGAAGCTTCAATCACTGATTTATATCCTAGATAG 1983 0.4453 MPTLLLLCMLVLLNCLATESAPGYLYHICPNTTTFNPNSSYETNLNFALSSLSSNATRDTGFYNVTAGRTPPDVAYGLFLCRGDVTSQVCQDCVATAVNETVRQRCRGFKQAIIWYDECMLRYSNESFFSQVSESPRVSMWNTQNITEPDQFNQVLGDTLDSIRTQAVNDQSGKKFATKEENFTGFQRVYSLVQCTPDLSPDQCDRCLIGTIAILPDCCGGKQGARVLFPSCNVRYELYPFYQSVAAPPSPPPARPSEPSTEGKGGISSKTIVIIVVPTFVSVVIFSILCYCFIRRCAKKRYDTLEAENVEFNITTEQSLQFDLATIQAATNNFSDHNKIGEGGFGAVYKGTLSSGQEIAIKRLSKSSGQGAVEFKNEVVLVAKLQHRNLVRLLGFCLEGEEKILVYEYVPNKSLDYFLFDPDKRGQLDWSRRYKIIGGIARGILYLHEDSRLRVIHRDLKASNVLLDGDMNPKISDFGMARIFGVDQTQGNTNRVVGTYGYMSPEYAMHGRFSVKSDVYSFGVLVLEIISGKRSNCFHESDQAEDLLSYAWKLWRNDTPLEFMGPTTRNSFSKNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPASFSRTGALSDFPIMALESDQSASKSMTWSVNEASITDLYPR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1169 660 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vvi2g1169 660 SMART serkin_6 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1169 660 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Vvi2g1169 660 ProSiteProfiles Protein kinase domain profile. 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1169 660 FunFam cysteine-rich receptor-like protein kinase 10 410 612 - -
Vvi2g1169 660 Pfam Protein tyrosine and serine/threonine kinase 337 603 IPR001245 GO:0004672|GO:0006468
Vvi2g1169 660 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 659 - -
Vvi2g1169 660 FunFam Cysteine-rich receptor-like protein kinase 10 296 409 - -
Vvi2g1169 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vvi2g1169 660 Gene3D - 135 241 IPR038408 -
Vvi2g1169 660 Gene3D - 22 128 IPR038408 -
Vvi2g1169 660 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Vvi2g1169 660 ProSiteProfiles Gnk2-homologous domain profile. 134 241 IPR002902 -
Vvi2g1169 660 Pfam Salt stress response/antifungal 29 125 IPR002902 -
Vvi2g1169 660 Pfam Salt stress response/antifungal 144 239 IPR002902 -
Vvi2g1169 660 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 22 128 - -
Vvi2g1169 660 CDD STKc_IRAK 340 605 - -
Vvi2g1169 660 Gene3D Phosphorylase Kinase; domain 1 295 409 - -
Vvi2g1169 660 SUPERFAMILY Protein kinase-like (PK-like) 320 632 IPR011009 -
Vvi2g1169 660 FunFam Cysteine-rich receptor-like protein kinase 10 136 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1169 Vvi-Chr2 18775046 18778401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1169 6 660 Receptor kinase-like Gene Family AT4G05200 55.015 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi2g1169 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1169 - - vvi:100257888 1295.03