Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1168 ATGGTAGTGGCTTGTAGTGGTTACATGTCTCTCGAGTATGCAATGCAAGGACAATTCTCTAACAAGTCTGATTTGTATAGTTTTGGTGTCTTGATTTTAGAGATTATAAGTGCTAAAAAGAATAGTAGTTTCTATCAATCAGACCATGCAGAAGACCTTCTAAGCCATACTTGGAGACTTTGGAAGAATGGCACACCCATGGACCCAACAATAGGGGACTCTTATACGAGAAATGAAGTCATTAAATGCATCCATATAAGTTTATTATGTGTTCAAGAGGTTCCATATGACAGACCGTCCATGGCATTCATAGTCCTCATGCTCAATAGTTACTCTAGCATTAGAATCAGATCAATCTGCAACCAAGTCTATTGGTGTTGTGCCAACTGGATACAGGTCTTTCTAGCTTCACTAGAGTCAGACAGACTTTTTCCCTGCACAAAAGGATTGATTCTTCATTGCAAATTGGAGGAAGAAATTGTGGTCATGAAGGTTTCCTTCAGTAGAAACTTGTTGTTCTTGTGCGCTCTTGGGCTGGCCATCAGCTGCCTTGCCATTCAAGCAGCACCTGACTACATACATCACGTCTGCTCCAACACAACTACTATCCAACCTAACAGCACCTACCAGACCAATCTCAATTCCCTTCTCTCTTCCCTTTCCTCTAATGCTACCCGTGCCAACGGATTCTACAATGCCACTGCCGGCCAGAGCCCCGATGTTGCCTACGGCCTCTTCCTCTGCCGAGGCGATGTTGCCATTGACGATTGTCGAGATTGTGTGGCGAATGCCAGTGCAGAGATACTACAGCAGTGTTCAGGGGTAAAAAAGGCCATTATTTGGTATGATCAGTGTATGTTACATTACTCAAACAGGTCCATCTTCTCTAGAGTGGAAGAAAATCCCATGCTGCAACTTTACAATCTGCAGAATGTCACAGATCCAGGTCCATTCAATCAGTTAGTGGTGGATACGATGAATGCCACAGCGACTCTAGCTGCGAATGATGAATCAGGCAAGAAGTTTGCGACCAAAGAAGAAAATTTCACGGGATCTCAAACGCTGTACAGTCTAGTTCAATGCACTCCGGATTTATCGATTGCCGATTGCAGTAAATGTTTAGAGGGAGCCATTGGAGCTCTTTCGCTTTGCTGCAGTGGAAAACAAGGAGCAAGGACTTTGACTCCAAGCTGCAATGCTAGGTATGAACTGTACCCGTTCTACCAGCTTGAAGCTGGACCATTGGCGCCGGCACTGGCACCAGCACCAACTTCGGCGACAGTGCTGCTTCCTCCGCCTCCTGCTCCGTCTTCTAAATCAAGCGCTACAGGTAAACTTTGA 1341 0.4519 MVVACSGYMSLEYAMQGQFSNKSDLYSFGVLILEIISAKKNSSFYQSDHAEDLLSHTWRLWKNGTPMDPTIGDSYTRNEVIKCIHISLLCVQEVPYDRPSMAFIVLMLNSYSSIRIRSICNQVYWCCANWIQVFLASLESDRLFPCTKGLILHCKLEEEIVVMKVSFSRNLLFLCALGLAISCLAIQAAPDYIHHVCSNTTTIQPNSTYQTNLNSLLSSLSSNATRANGFYNATAGQSPDVAYGLFLCRGDVAIDDCRDCVANASAEILQQCSGVKKAIIWYDQCMLHYSNRSIFSRVEENPMLQLYNLQNVTDPGPFNQLVVDTMNATATLAANDESGKKFATKEENFTGSQTLYSLVQCTPDLSIADCSKCLEGAIGALSLCCSGKQGARTLTPSCNARYELYPFYQLEAGPLAPALAPAPTSATVLLPPPPAPSSKSSATGKL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1168 446 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 175 414 - -
Vvi2g1168 446 MobiDBLite consensus disorder prediction 425 446 - -
Vvi2g1168 446 SUPERFAMILY Protein kinase-like (PK-like) 3 113 IPR011009 -
Vvi2g1168 446 Pfam Salt stress response/antifungal 310 405 IPR002902 -
Vvi2g1168 446 Pfam Salt stress response/antifungal 197 291 IPR002902 -
Vvi2g1168 446 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 190 294 - -
Vvi2g1168 446 ProSiteProfiles Gnk2-homologous domain profile. 191 294 IPR002902 -
Vvi2g1168 446 Pfam Protein tyrosine and serine/threonine kinase 7 105 IPR001245 GO:0004672|GO:0006468
Vvi2g1168 446 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Vvi2g1168 446 Gene3D - 189 293 IPR038408 -
Vvi2g1168 446 Gene3D - 300 407 IPR038408 -
Vvi2g1168 446 FunFam Cysteine-rich receptor-like protein kinase 10 302 407 - -
Vvi2g1168 446 ProSiteProfiles Gnk2-homologous domain profile. 300 407 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1168 Vvi-Chr2 18746619 18751138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1168 186 442 Receptor kinase-like Gene Family AT4G05200 47.710 8.90e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi2g1168 PK_Tyr_Ser-Thr 6.5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1168 - - vvi:104877547 489.96