Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1158 ATGGCTCGTGGGCATAGGATTGAATCCGTCTTGGAGCTTCCTCTAGTGATTGGAGATTCAACCAAGAGCGTCGATAAAACATCGACGACAATTGATATTTTGAAGCAAGTTGGTGCTTGTCCTGATGTAGAGAAGGCGAAAGACAACTATGGTATTCATCCCAGAAAGGATTTTTTGGTTATGAAGCATTTAGGAAAAATAAAGAAATATTTGTGGTTCCTTCGAGCAGCAGGTCCCCTCACAGGAGTTGTCTTGGGCATTGTTTTTGTGAAAATATTCCATCCATCTTCGATTTCTGTGGTTGGGAAAATACCACAGGGCCTGCCAAAATTTTATGTTCCTAAAAGTTTTGGGATATGCTTGGACTTGTAA 372 0.4086 MARGHRIESVLELPLVIGDSTKSVDKTSTTIDILKQVGACPDVEKAKDNYGIHPRKDFLVMKHLGKIKKYLWFLRAAGPLTGVVLGIVFVKIFHPSSISVVGKIPQGLPKFYVPKSFGICLDL* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1158 123 PANTHER 60S RIBOSOMAL PROTEIN L4 1 107 IPR045240 -
Vvi2g1158 123 Pfam Sulfate permease family 59 115 IPR011547 GO:0016020
Vvi2g1158 123 Gene3D - 1 67 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vvi2g1158 123 SUPERFAMILY Ribosomal protein L4 1 50 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1158 Vvi-Chr2 18512183 18512554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1158 59 117 Inorganic Solute Cotransporters AT3G12520 69.492 2.67e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1158 K18059 - vvi:100257994 241.506