Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1155 ATGCCCCTCAACTGCATAGCCCCAAAACCGGAAAATCAAGGCAACATCCCCATGGAAGGTTTGTCCAGGACATCTGAATCCGACAACTCAGCCGTCCTTACCTACCCCATGCAAACCAATTCACAATCTATTCTACAACACACCTTGTACTCCATAAATCTCAAGTTTGAAGAGGTCGTTTACAAAGTTAAATTAGAGCAGAAAGGGTTTTGCTGGGGGGGTGCATGGAGCACCAGAGACAAGACAATACTGAATGGAATAACAGGCATGGTTTGTCCAGGAGAGATACTAGCGATGTTAGGGCCATCTGGGAGCGGCAAAACCACACTCCTTACAGCCCTTGGAGGCCGTCTCAATGGTAAGTTATCAGGCAAGATCACGTACAATGGTCAGCCTTTCTCTGGCGCTGTCAAACGAAGAACAGGATTTGTTGCACAGGACGATGTTCTCTACCCGCATCTTACTGTAACTGAAACCCTCCTATTCACTGCACTGCTAAGGCTGCCAAAAAGCTTGGCACGAAATGAGAAAGCCCAGCATGTGGAGAGGGTCATCTCTGAGTTGGGATTAACACGGTGTCGGAACAGCATGATTGGGGGACCTCTCTTTAGGGGCATATCAGGTGGGGAGAAGAAGAGGGTGAGCATAGGCCAAGAAATGCTAATCAACCCAAGCTTGCTGTTGCTAGATGAGCCCACCTCAGGTTTGGACTCGACCACTGCTCAACGGATCCTAACCACCATTAAACGACTGGCTAGTGGGGGTAGAACCGTGGTCACCACTATTCACCAGCCCTCAAGCCGCCTCTACCACATGTTTGATAAGGTAATCTTGCTTTCTGAGGGCTGCCCCATCTACAATGGTCCTGCATCAACTGCCATGGAATACTTCTCCTCAGTTGGTTTCTCCACATGCGTGACTGTCAATCCAGCTGATCTCTTACTCGATCTTGCTAACGGAATTAGCCCTGATTCCAAGCAAGCAGCGGAGCAAAGTGAGAACATGGAACAAGAGCAGAAGTCAGTGAGAGAAGCTCTCATCTCCGCCTATGAAAAGAACATTTCTACTAGGCTGAAAGCCGAGCTCTGCAGTGTGGATGTCAATAACTACAATTATACAAAGGACGGTCGTGCAAGAAATAACTTCAAGGCAGATCAATGGTGCACAAGCTGGTGGCATCAGTTCATGGTGCTGCTTCAGAGGGGACTAAGGGAAAGGAGGTACGAAGCCTTCAACAGGCTAAGAATCTTCCAAGTCATAAGTGTCGCTGTGCTAGGCGGTCTTCTATGGTGGCACACCCCAACATCCCACATTGAGGATCGAATAGCCCTGCTCTTCTTCTTCTCTGTGTTCTGGGGGTTCTACCCACTCTACAATGCAGTCTTTACATTTCCCCAAGAAAGAAGAATGCTGATCAAGGAACGATCATCTGGCATGTACCGCCTTTCATCATACTTTCTAGCCAGAACTTTTGGAGACCTGCCACTTGAGCTTGCTCTCCCAACAGCCTTTGTCATCATAATCTACTGGATGGGTGGACTAAAACCTGATCCCATCACTTTCATCCTTTCTCTTCTTGTCGTTCTCTACAATGTCCTTGTCTCCCAAAGTCTGGGCTTAGCCATTGGCGCAATACTGATGGACATAAAACAAGCAACTACTTTAGCCTCTGTTACAACCCTAGTGTTCCTGATCGCGGGCGGATACTATGTGCAACAAATCCCTCCCTTCATTGTCTGGCTAAAGTACTTGAGCTATAGCTACTACTGCTATAAGCTTCTCCTCGGGATACAGTACAGCGAGGATGACTACTACGAGTGCTCCAAGGGGGTGTTTTGTCGGGTTGTAGATTTTCCTGCAGTCAAATCCGTGGGGCTCAACCATTTGTGGATTGATGTGTGCATTATGGCCCTGATGTTGGTGGGGTATCGACTTGTTGCTTATCTGGCATTGCATCGGGTACAGTTGAGGTGA 1974 0.4807 MPLNCIAPKPENQGNIPMEGLSRTSESDNSAVLTYPMQTNSQSILQHTLYSINLKFEEVVYKVKLEQKGFCWGGAWSTRDKTILNGITGMVCPGEILAMLGPSGSGKTTLLTALGGRLNGKLSGKITYNGQPFSGAVKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPKSLARNEKAQHVERVISELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLASGGRTVVTTIHQPSSRLYHMFDKVILLSEGCPIYNGPASTAMEYFSSVGFSTCVTVNPADLLLDLANGISPDSKQAAEQSENMEQEQKSVREALISAYEKNISTRLKAELCSVDVNNYNYTKDGRARNNFKADQWCTSWWHQFMVLLQRGLRERRYEAFNRLRIFQVISVAVLGGLLWWHTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTFGDLPLELALPTAFVIIIYWMGGLKPDPITFILSLLVVLYNVLVSQSLGLAIGAILMDIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYSEDDYYECSKGVFCRVVDFPAVKSVGLNHLWIDVCIMALMLVGYRLVAYLALHRVQLR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1155 657 Pfam ABC-2 type transporter 394 599 IPR013525 GO:0016020|GO:0140359
Vvi2g1155 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 298 IPR027417 -
Vvi2g1155 657 Gene3D - 74 301 IPR027417 -
Vvi2g1155 657 MobiDBLite consensus disorder prediction 1 24 - -
Vvi2g1155 657 FunFam ABC transporter G family member 22 71 300 - -
Vvi2g1155 657 Pfam ABC transporter 84 234 IPR003439 GO:0005524
Vvi2g1155 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 306 IPR003439 GO:0005524
Vvi2g1155 657 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 648 - -
Vvi2g1155 657 CDD ABCG_EPDR 51 288 - -
Vvi2g1155 657 ProSitePatterns ABC transporters family signature. 206 220 IPR017871 GO:0005524|GO:0016887
Vvi2g1155 657 Coils Coil 325 345 - -
Vvi2g1155 657 SMART AAA_5 93 283 IPR003593 GO:0016887
Vvi2g1155 657 Pfam ABC-2 type transporter 263 353 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1155 Vvi-Chr2 18431736 18434852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1155 54 282 Calmodulin-binding Proteins AT2G36910 30.085 3.70e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1155 K05681 - vvi:100247745 1300.42